View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20665_high_188 (Length: 235)

Name: NF20665_high_188
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20665_high_188
NF20665_high_188
[»] chr2 (9 HSPs)
chr2 (4-230)||(2768392-2768618)
chr2 (4-130)||(6798984-6799110)
chr2 (12-130)||(42517969-42518087)
chr2 (15-130)||(39456368-39456483)
chr2 (4-81)||(17697685-17697762)
chr2 (13-130)||(34400720-34400839)
chr2 (4-130)||(19907128-19907255)
chr2 (4-130)||(39663555-39663680)
chr2 (16-120)||(31474647-31474751)
[»] chr5 (8 HSPs)
chr5 (1-130)||(34328379-34328508)
chr5 (4-130)||(32134648-32134774)
chr5 (4-80)||(8540853-8540929)
chr5 (12-130)||(12801084-12801202)
chr5 (4-122)||(18623865-18623983)
chr5 (12-130)||(12738261-12738379)
chr5 (4-81)||(30464403-30464480)
chr5 (4-122)||(41494254-41494372)
[»] chr6 (8 HSPs)
chr6 (12-130)||(20524894-20525012)
chr6 (4-81)||(9399627-9399704)
chr6 (16-127)||(33277195-33277306)
chr6 (4-122)||(6902468-6902586)
chr6 (4-81)||(33267481-33267558)
chr6 (4-130)||(11356704-11356830)
chr6 (15-130)||(32518061-32518175)
chr6 (14-69)||(7371584-7371639)
[»] chr4 (8 HSPs)
chr4 (4-130)||(35402160-35402286)
chr4 (4-130)||(11254470-11254596)
chr4 (4-122)||(54387453-54387571)
chr4 (6-125)||(41760144-41760263)
chr4 (5-80)||(42982055-42982130)
chr4 (19-130)||(49524326-49524436)
chr4 (4-121)||(2691785-2691902)
chr4 (44-115)||(11641602-11641673)
[»] chr7 (15 HSPs)
chr7 (4-130)||(45360845-45360971)
chr7 (4-122)||(47384704-47384822)
chr7 (4-115)||(46438063-46438174)
chr7 (4-122)||(48850967-48851086)
chr7 (12-130)||(37114342-37114460)
chr7 (1-130)||(38472663-38472793)
chr7 (12-130)||(6604956-6605074)
chr7 (13-130)||(24226966-24227083)
chr7 (4-80)||(34775502-34775578)
chr7 (8-130)||(22155413-22155536)
chr7 (8-130)||(22211328-22211451)
chr7 (15-130)||(23905009-23905124)
chr7 (4-130)||(39858091-39858218)
chr7 (4-122)||(38549941-38550059)
chr7 (4-130)||(13169215-13169344)
[»] chr1 (12 HSPs)
chr1 (4-130)||(37087688-37087814)
chr1 (4-130)||(51894979-51895105)
chr1 (4-130)||(6817291-6817417)
chr1 (4-122)||(15105902-15106020)
chr1 (1-130)||(31237231-31237360)
chr1 (15-130)||(45045323-45045437)
chr1 (12-130)||(2870636-2870753)
chr1 (16-130)||(3012267-3012381)
chr1 (15-130)||(25277187-25277301)
chr1 (4-130)||(50554592-50554718)
chr1 (4-122)||(52642324-52642442)
chr1 (15-130)||(37345526-37345640)
[»] chr3 (11 HSPs)
chr3 (5-130)||(30598749-30598874)
chr3 (4-130)||(21350173-21350299)
chr3 (4-130)||(43766600-43766726)
chr3 (4-80)||(23292033-23292109)
chr3 (12-130)||(2378500-2378618)
chr3 (4-130)||(27897604-27897730)
chr3 (4-122)||(42282051-42282169)
chr3 (4-122)||(51685929-51686047)
chr3 (4-81)||(24846125-24846202)
chr3 (41-130)||(17516561-17516650)
chr3 (45-132)||(44268391-44268476)
[»] chr8 (9 HSPs)
chr8 (4-80)||(13484976-13485052)
chr8 (12-130)||(22273459-22273577)
chr8 (4-130)||(41041124-41041250)
chr8 (15-130)||(5037626-5037741)
chr8 (5-130)||(42942979-42943103)
chr8 (4-80)||(26239172-26239248)
chr8 (13-122)||(41824360-41824469)
chr8 (1-130)||(40338225-40338347)
chr8 (53-122)||(3152384-3152453)
[»] scaffold0345 (1 HSPs)
scaffold0345 (4-130)||(1065-1191)
[»] scaffold0564 (1 HSPs)
scaffold0564 (19-130)||(9463-9575)
[»] scaffold0004 (1 HSPs)
scaffold0004 (7-122)||(107084-107199)


Alignment Details
Target: chr2 (Bit Score: 174; Significance: 9e-94; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 4 - 230
Target Start/End: Original strand, 2768392 - 2768618
Alignment:
Q  4 ccatacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagtt 103  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||       ||| |||||||| ||    
T  2768392 ccatacgtccaccactcatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcgaattgaatcaaaaaaattagggctttaaatt 2768491  T
Q  104 ttttgaattgggaaagaacattaacattataatttcgtccattctttttgtacaaaagaagacagaagcacaacaatttcgtccatttaaacatgaaagc 203  Q
     ||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2768492 atttaaattggggaagaacattgacattataatttcgtccattctttttgtacaaaagaagacagaagcacaacaatttcgtccatttaaacatgaaagc 2768591  T
Q  204 aatatgacaatgtaaattaatttgagt 230  Q
    |||||||||||||||||||||||||||    
T  2768592 aatatgacaatgtaaattaatttgagt 2768618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 4 - 130
Target Start/End: Original strand, 6798984 - 6799110
Alignment:
Q  4 ccatacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagtt 103  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||       |||||| ||||||||    
T  6798984 ccatacgcccaccacccatcatttctgaacactgaatcttcaacaatgatcactgatttttgaatttcgaattgaatcaaaaaaattaaggttttaagtt 6799083  T
Q  104 ttttgaattgggaaagaacattaacat 130  Q
    |||||||||||| ||||||||| ||||    
T  6799084 ttttgaattggggaagaacattgacat 6799110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 42518087 - 42517969
Alignment:
Q  12 ccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagttttttgaat 111  Q
    |||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||| |||||||||       ||| || ||||||||||||||||    
T  42518087 ccaccacccatcatttttgaacaccaaatcttcaacaatgaccactgatttttgaatttcgaattgaatcaaaaaaattagggttttaagttttttgaat 42517988  T
Q  112 tgggaaagaacattaacat 130  Q
    |||| ||||||||| ||||    
T  42517987 tggggaagaacattgacat 42517969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 130
Target Start/End: Original strand, 39456368 - 39456483
Alignment:
Q  15 ccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagttttttgaattgg 114  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||       | | || |||||||||||||||||||    
T  39456368 ccacccatcatttctgaacatcgaatcttcaacaatgaccactgatttttgaatttcgaattgaatcaaaaaaatcagggttttaagttttttgaattgg 39456467  T
Q  115 gaaagaacattaacat 130  Q
    | ||||||||| ||||    
T  39456468 ggaagaacattgacat 39456483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 17697685 - 17697762
Alignment:
Q  4 ccatacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatc 81  Q
    |||||||||||||||||||||||| ||||||| ||||||| ||||||||||||| |||||||||||||||||||||||    
T  17697685 ccatacgtccaccacccatcatttatgaacaccgaatcttgaacaatgaccactaatttttgaatttcaaattgaatc 17697762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 130
Target Start/End: Complemental strand, 34400839 - 34400720
Alignment:
Q  13 caccacccatcatttctgaacactgaatcttcaacaatgaccactgat-ttttgaatttcaaattgaat-cnnnnnnnttaaggctttaagttttttgaa 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||| |       ||| || |||||||||||||||    
T  34400839 caccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttttaatttcgaattgaatccaaaaaaattagggttttaagttttttgaa 34400740  T
Q  111 ttgggaaagaacattaacat 130  Q
    ||||| ||||||||| ||||    
T  34400739 ttggggaagaacattgacat 34400720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 19907255 - 19907128
Alignment:
Q  4 ccatacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatc-nnnnnnnttaaggctttaagt 102  Q
    ||||||| ||||||| |||||||||||||||| |||| ||||||||||||||||| |||||||||||| |||||||||        ||| || |||||||    
T  19907255 ccatacgcccaccactcatcatttctgaacaccgaatattcaacaatgaccactggtttttgaatttcgaattgaatcaaaaaaaattagggttttaagt 19907156  T
Q  103 tttttgaattgggaaagaacattaacat 130  Q
    ||||||||||||  ||||||||| ||||    
T  19907155 tttttgaattggtgaagaacattgacat 19907128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 39663680 - 39663555
Alignment:
Q  4 ccatacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagtt 103  Q
    ||||||| ||||||| |||||||||||| ||| |||| ||||||||||||||||| |||||||||||| ||||||||         || || ||||||||    
T  39663680 ccatacgcccaccactcatcatttctgagcaccgaattttcaacaatgaccactggtttttgaatttcgaattgaat-aaaaaaaatagggttttaagtt 39663582  T
Q  104 ttttgaattgggaaagaacattaacat 130  Q
    |||||||||||| ||||||||| ||||    
T  39663581 ttttgaattggggaagaacattgacat 39663555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 31474647 - 31474751
Alignment:
Q  16 cacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagttttttgaattggg 115  Q
    ||||||||||||||||||||  || ||| |||||| |||||||||||||| ||||| ||||||| |       ||| || |||| |||||||||||||||    
T  31474647 cacccatcatttctgaacaccaaagcttgaacaataaccactgatttttggatttcgaattgaaccaaaaaaattagggttttaggttttttgaattggg 31474746  T
Q  116 aaaga 120  Q
    |||||    
T  31474747 aaaga 31474751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 34328379 - 34328508
Alignment:
Q  1 tgtccatacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaa 100  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||       ||| || |||||    
T  34328379 tgtccatacgcccaccacccatcatttctgaacaccgaatcttcaacaatgaccactgatttttgaatttcgaattgaatcaaaaaaattagggttttaa 34328478  T
Q  101 gttttttgaattgggaaagaacattaacat 130  Q
    ||||||||||||||| ||||||||| ||||    
T  34328479 gttttttgaattggggaagaacattgacat 34328508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 32134774 - 32134648
Alignment:
Q  4 ccatacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagtt 103  Q
    ||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||       ||| || ||||||||    
T  32134774 ccatacgcccaccacccatcatttatgaacaccgaatcttcaacaatgaccactgatttttgaatttcgaattgaatcaaaaaaattagggttttaagtt 32134675  T
Q  104 ttttgaattgggaaagaacattaacat 130  Q
    |||||||||||| ||||||||| ||||    
T  32134674 ttttgaattggggaagaacattgacat 32134648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 8540853 - 8540929
Alignment:
Q  4 ccatacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaat 80  Q
    ||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  8540853 ccatacgcccaccgcccatcatttctgaacaccgaatcttcaacaatgaccactgatttttgaatttcgaattgaat 8540929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 12801084 - 12801202
Alignment:
Q  12 ccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagttttttgaat 111  Q
    ||||||| |||||||| ||||||| |||| ||||||||||||||||| |||||||||||| |||||||||       ||| || ||||||||||||||||    
T  12801084 ccaccactcatcatttttgaacaccgaatattcaacaatgaccactggtttttgaatttcgaattgaatcaaaaaaattagggttttaagttttttgaat 12801183  T
Q  112 tgggaaagaacattaacat 130  Q
    |||| ||||||||| ||||    
T  12801184 tggggaagaacattgacat 12801202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 122
Target Start/End: Complemental strand, 18623983 - 18623865
Alignment:
Q  4 ccatacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagtt 103  Q
    ||||||| |||| ||||||||||||| ||||   ||||||||||||||||| ||||||||||||||||||||||||||       ||| || ||||||||    
T  18623983 ccatacgcccactacccatcatttctaaacaacaaatcttcaacaatgaccgctgatttttgaatttcaaattgaatcaaaaaaattagggttttaagtt 18623884  T
Q  104 ttttgaattgggaaagaac 122  Q
    |||||||||||| ||||||    
T  18623883 ttttgaattggggaagaac 18623865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 12738261 - 12738379
Alignment:
Q  12 ccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagttttttgaat 111  Q
    ||||||| |||||||| | ||||| |||| ||||||||||||||||| |||||||||||| |||||||||       ||| || ||||||||||||||||    
T  12738261 ccaccactcatcattttttaacaccgaatattcaacaatgaccactggtttttgaatttcgaattgaatcaaaaaaattagggttttaagttttttgaat 12738360  T
Q  112 tgggaaagaacattaacat 130  Q
    |||| ||||||||| ||||    
T  12738361 tggggaagaacattgacat 12738379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 30464480 - 30464403
Alignment:
Q  4 ccatacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatc 81  Q
    ||||||| |||| ||||||||||||||||||| ||||||||||||||||||| || |||||||||||| |||||||||    
T  30464480 ccatacgcccactacccatcatttctgaacaccgaatcttcaacaatgaccattggtttttgaatttcgaattgaatc 30464403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 122
Target Start/End: Complemental strand, 41494372 - 41494254
Alignment:
Q  4 ccatacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagtt 103  Q
    |||||||||||||||||||||||||| |||| | ||||||||||||| |||||||||||||| ||||| ||||||||        | | || ||||||||    
T  41494372 ccatacgtccaccacccatcatttctaaacattaaatcttcaacaataaccactgatttttggatttctaattgaataaaaaaaatcagggttttaagtt 41494273  T
Q  104 ttttgaattgggaaagaac 122  Q
    |||||||||||| ||||||    
T  41494272 ttttgaattggggaagaac 41494254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 20524894 - 20525012
Alignment:
Q  12 ccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagttttttgaat 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||       ||| || ||||||||||||||||    
T  20524894 ccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcgaattgaatcaaaaaaattagggttttaagttttttgaat 20524993  T
Q  112 tgggaaagaacattaacat 130  Q
    |||| ||||||||| ||||    
T  20524994 tggggaagaacattgacat 20525012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 9399627 - 9399704
Alignment:
Q  4 ccatacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatc 81  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  9399627 ccatacgtccaccacccatcatttctgaacaccaaatcttcaacaatgaccactgatttttgaatttcaaattgaatc 9399704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 33277306 - 33277195
Alignment:
Q  16 cacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagttttttgaattggg 115  Q
    |||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||       ||| || ||||||||||||||||||||    
T  33277306 cacccatcatttatgaacaccaaatcttcaacaatgaccactgatttttgaatttcaaattgaatcaaaaaaattagggttttaagttttttgaattggg 33277207  T
Q  116 aaagaacattaa 127  Q
     |||||| ||||    
T  33277206 gaagaactttaa 33277195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 122
Target Start/End: Original strand, 6902468 - 6902586
Alignment:
Q  4 ccatacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagtt 103  Q
    ||||||| |||||||||||||||| |||||||  ||||||||||||||||||||||||||| |||||| ||||||||        ||| || ||||||||    
T  6902468 ccatacgcccaccacccatcatttatgaacaccaaatcttcaacaatgaccactgattttttaatttcgaattgaataaaaaaaattagggttttaagtt 6902567  T
Q  104 ttttgaattgggaaagaac 122  Q
    |||||||||||| ||||||    
T  6902568 ttttgaattggggaagaac 6902586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 33267558 - 33267481
Alignment:
Q  4 ccatacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatc 81  Q
    ||||||| ||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||||| |||||||||    
T  33267558 ccatacgcccaccacccatcatttctgaacaccaaatcttcaacaatgaccattgatttttgaatttcgaattgaatc 33267481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 130
Target Start/End: Original strand, 11356704 - 11356830
Alignment:
Q  4 ccatacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagtt 103  Q
    ||||||| ||||| ||| |||||||||||||| |||||||||||||||||||||| |||||||||||  |||||||||       ||| ||  |||| ||    
T  11356704 ccatacgcccaccgcccttcatttctgaacaccgaatcttcaacaatgaccactggtttttgaattttgaattgaatcaaaaaaattagggtcttaaatt 11356803  T
Q  104 ttttgaattgggaaagaacattaacat 130  Q
    |||||||||||| ||||||||| ||||    
T  11356804 ttttgaattggggaagaacattgacat 11356830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 130
Target Start/End: Original strand, 32518061 - 32518175
Alignment:
Q  15 ccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagttttttgaattgg 114  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||  |||||||||       ||| || | |||||||||||||||||    
T  32518061 ccacccatcatttatgaacaccgaatcttcaacaatgaccactgatttttgaattttgaattgaatc-aaacaattagggttctaagttttttgaattgg 32518159  T
Q  115 gaaagaacattaacat 130  Q
    | ||||||||| ||||    
T  32518160 ggaagaacattgacat 32518175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 7371639 - 7371584
Alignment:
Q  14 accacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatt 69  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  7371639 accacccatcatttctgaacaccgaatcttcaacaatgaccactgatttttgaatt 7371584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 35402286 - 35402160
Alignment:
Q  4 ccatacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagtt 103  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||       ||| || ||||||||    
T  35402286 ccatacgtccaccacccatcatttctgaacaccgaatcttcaacaatgaccactgatttttgaatttcgaattgaatcaaaaaaattagggttttaagtt 35402187  T
Q  104 ttttgaattgggaaagaacattaacat 130  Q
    |||| ||||||| ||||||||| ||||    
T  35402186 tttttaattggggaagaacattgacat 35402160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 11254596 - 11254470
Alignment:
Q  4 ccatacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagtt 103  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||       ||| || ||| ||||    
T  11254596 ccatacgcccaccacccatcatttttgaacactgaatcttcaacaatgaccactaatttttgaatttcgaattgaatcaaaaaaattagggttttgagtt 11254497  T
Q  104 ttttgaattgggaaagaacattaacat 130  Q
    |||||||||||| ||||||||| ||||    
T  11254496 ttttgaattggggaagaacattgacat 11254470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 122
Target Start/End: Original strand, 54387453 - 54387571
Alignment:
Q  4 ccatacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagtt 103  Q
    ||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||        ||| || ||||||||    
T  54387453 ccatacgcccaccacccatcatttctgaacaccaaatcttcaacaatgaccactgatttttgaatttcgaattgaataaaaataattagggttttaagtt 54387552  T
Q  104 ttttgaattgggaaagaac 122  Q
    |||||||||||| ||||||    
T  54387553 ttttgaattggggaagaac 54387571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 125
Target Start/End: Complemental strand, 41760263 - 41760144
Alignment:
Q  6 atacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagtttt 105  Q
    ||||||| ||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||        ||| || ||||| ||||    
T  41760263 atacgtctacctcccatcatttctgaacatcgaatcttcaacaatgaccactgatttttgaatttcgaattgaataaaaaaaattagggttttaattttt 41760164  T
Q  106 ttgaattgggaaagaacatt 125  Q
    |||||||||| |||||||||    
T  41760163 ttgaattggggaagaacatt 41760144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 42982055 - 42982130
Alignment:
Q  5 catacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaat 80  Q
    |||||| ||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||    
T  42982055 catacgcccaccacccgtcatttctgaacaccgaatcttcaacaatgactactgatttttgaatttcgaattgaat 42982130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 49524326 - 49524436
Alignment:
Q  19 ccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagttttttgaattgggaaa 118  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||||  |||||||||       ||| || |||||||||||||||||||| ||    
T  49524326 ccatcatttctgaacaccgaatcttcaacaatgaccac-gatttttgaattttgaattgaatcaaaaaaattagggttttaagttttttgaattggggaa 49524424  T
Q  119 gaacattaacat 130  Q
    ||||||| ||||    
T  49524425 gaacattgacat 49524436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 121
Target Start/End: Complemental strand, 2691902 - 2691785
Alignment:
Q  4 ccatacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagtt 103  Q
    ||||||| ||||||||||||||||||||||||  ||||||||||||| |||| ||||||||| | ||  ||||||||        ||| || ||||||||    
T  2691902 ccatacgcccaccacccatcatttctgaacaccaaatcttcaacaattaccagtgatttttggactttgaattgaataaaaaaaattagggttttaagtt 2691803  T
Q  104 ttttgaattgggaaagaa 121  Q
    |||||||||||| |||||    
T  2691802 ttttgaattggggaagaa 2691785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 115
Target Start/End: Original strand, 11641602 - 11641673
Alignment:
Q  44 caacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagttttttgaattggg 115  Q
    ||||||| |||||||||||||| ||||| |||||||||       ||| || ||||||||||||||||||||    
T  11641602 caacaataaccactgatttttggatttcgaattgaatcaaaaaagttagggttttaagttttttgaattggg 11641673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 4 - 130
Target Start/End: Original strand, 45360845 - 45360971
Alignment:
Q  4 ccatacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagtt 103  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||        ||| || ||||||||    
T  45360845 ccatacgtccaccactcatcatttatgaacactgaatcttcaacaatgaccactgatttttgaattttaaattgaataaaaaaaattagggttttaagtt 45360944  T
Q  104 ttttgaattgggaaagaacattaacat 130  Q
    |||||||||||| ||||||||| ||||    
T  45360945 ttttgaattggggaagaacattgacat 45360971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 122
Target Start/End: Complemental strand, 47384822 - 47384704
Alignment:
Q  4 ccatacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagtt 103  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||        ||| || ||||||||    
T  47384822 ccatacgtccaccacccatcatttctgaacaccaaatcttcaacaatgaccactgatttttgaatttcgaattgaataaaaaaaattagggttttaagtt 47384723  T
Q  104 ttttgaattgggaaagaac 122  Q
    |||||||||||| ||||||    
T  47384722 ttttgaattggggaagaac 47384704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 4 - 115
Target Start/End: Complemental strand, 46438174 - 46438063
Alignment:
Q  4 ccatacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagtt 103  Q
    ||||||| |||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||       ||| || ||||||||    
T  46438174 ccatacgcccaccacccatcatttatgaacaccgaatcttcaacaatgaccattgatttttgaatttcaaattgaatcaaaaaaattagggttttaagtt 46438075  T
Q  104 ttttgaattggg 115  Q
    ||||||||||||    
T  46438074 ttttgaattggg 46438063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 4 - 122
Target Start/End: Complemental strand, 48851086 - 48850967
Alignment:
Q  4 ccatacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatc-nnnnnnnttaaggctttaagt 102  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||        ||| || |||||||    
T  48851086 ccatacgtccaccacccatcatttctgaacaccgaatcttcaacaatgatcactgatttttgaatttcgaattgaatcaaaaaaaattagggttttaagt 48850987  T
Q  103 tttttgaattgggaaagaac 122  Q
    ||||||||||||| ||||||    
T  48850986 tttttgaattggggaagaac 48850967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 37114460 - 37114342
Alignment:
Q  12 ccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagttttttgaat 111  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||       ||| || |||||||||||| |||    
T  37114460 ccaccatccatcatttctgaacaccgaatcttcaacaatgaccactgatttttcaatttcaaattgaatcaaaaaaattagggttttaagttttttaaat 37114361  T
Q  112 tgggaaagaacattaacat 130  Q
    |||| ||||||||| ||||    
T  37114360 tggggaagaacattgacat 37114342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 38472793 - 38472663
Alignment:
Q  1 tgtccatacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaat-cnnnnnnnttaaggcttta 99  Q
    |||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||         ||| || ||||    
T  38472793 tgtccatacgcccaccacccatcatttgtgaacaccgaatcttcaacaatgaccactgatttttgaatttcgaattgaataaaaaaaaattagggtttta 38472694  T
Q  100 agttttttgaattgggaaagaacattaacat 130  Q
    |||||||||||||||| ||||||||| ||||    
T  38472693 agttttttgaattggggaagaacattgacat 38472663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 6604956 - 6605074
Alignment:
Q  12 ccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagttttttgaat 111  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||| |||||||||       ||| || ||||||||||||||||    
T  6604956 ccaccacccatcatttccgaacaccgaatcttcaacaatgaccactggtttttgaatttcgaattgaatcaaaaaaattagggttttaagttttttgaat 6605055  T
Q  112 tgggaaagaacattaacat 130  Q
    |||| || |||||| ||||    
T  6605056 tggggaaaaacattgacat 6605074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 130
Target Start/End: Complemental strand, 24227083 - 24226966
Alignment:
Q  13 caccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagttttttgaatt 112  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||       ||| ||  ||||||||||||||||    
T  24227083 cacctcccatcatttctgaacaccgaatcttcaacaatgaccactgattttcgaatttcgaattgaatcaaaaaaattagggtcttaagttttttgaatt 24226984  T
Q  113 gggaaagaacattaacat 130  Q
    ||| ||||||||| ||||    
T  24226983 ggggaagaacattgacat 24226966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 34775578 - 34775502
Alignment:
Q  4 ccatacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaat 80  Q
    |||||| |||||||| |||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||    
T  34775578 ccatacttccaccactcatcatttctgaacaccgaatcttcaacaatgaccactggttttttaatttcaaattgaat 34775502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 22155413 - 22155536
Alignment:
Q  8 acgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatc-nnnnnnnttaaggctttaagttttt 106  Q
    |||||||||||||||||||| ||||||| ||||||||||| ||||| ||||||||||||||||  |||||||||        ||| || |||||||||||    
T  22155413 acgtccaccacccatcatttttgaacaccgaatcttcaacgatgactactgatttttgaattttgaattgaatcaaaaaaagttagggttttaagttttt 22155512  T
Q  107 tgaattgggaaagaacattaacat 130  Q
    ||||||||| ||||||||| ||||    
T  22155513 tgaattggggaagaacattgacat 22155536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 22211328 - 22211451
Alignment:
Q  8 acgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatc-nnnnnnnttaaggctttaagttttt 106  Q
    |||||||||||||||||||| ||||||| ||||||||||| ||||| ||||||||||||||||  |||||||||        ||| || |||||||||||    
T  22211328 acgtccaccacccatcatttttgaacaccgaatcttcaacgatgactactgatttttgaattttgaattgaatcaaaaaaagttagggttttaagttttt 22211427  T
Q  107 tgaattgggaaagaacattaacat 130  Q
    ||||||||| ||||||||| ||||    
T  22211428 tgaattggggaagaacattgacat 22211451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 23905124 - 23905009
Alignment:
Q  15 ccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagttttttgaattgg 114  Q
    ||||||||||||| |||||||  |||||| ||||||||||||||||||||||||||| ||||||||        ||| || |||||||||||||||||||    
T  23905124 ccacccatcatttttgaacacctaatctttaacaatgaccactgatttttgaatttcgaattgaataaaaaatattagggttttaagttttttgaattgg 23905025  T
Q  115 gaaagaacattaacat 130  Q
    | ||||||||| ||||    
T  23905024 ggaagaacattgacat 23905009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 39858218 - 39858091
Alignment:
Q  4 ccatacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatc-nnnnnnnttaaggctttaagt 102  Q
    ||||||| ||||||| |||||||||||||||| |||| ||||||||||||||||| |||||||||||| |||||||||        ||| || |||||||    
T  39858218 ccatacgcccaccactcatcatttctgaacaccgaatattcaacaatgaccactggtttttgaatttcgaattgaatcaaaaaaaattagggttttaagt 39858119  T
Q  103 tttttgaattgggaaagaacattaacat 130  Q
    ||||||||||||  ||||||||| ||||    
T  39858118 tttttgaattggtgaagaacattgacat 39858091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 122
Target Start/End: Complemental strand, 38550059 - 38549941
Alignment:
Q  4 ccatacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagtt 103  Q
    ||||||| ||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||  ||||||||        ||| |  ||||||||    
T  38550059 ccatacgcccaccacccatcatttctgaacaccaaatcttcaataatgaccactgatttttgaattttgaattgaataaaaaaaattaggattttaagtt 38549960  T
Q  104 ttttgaattgggaaagaac 122  Q
    |||||||||||| ||||||    
T  38549959 ttttgaattggggaagaac 38549941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 130
Target Start/End: Original strand, 13169215 - 13169344
Alignment:
Q  4 ccatacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatc---nnnnnnnttaaggctttaa 100  Q
    ||||||| ||||||| |||||||||||||||| |||| ||||||||||||||||  |||||||||||| |||||||||          ||| || |||||    
T  13169215 ccatacgcccaccactcatcatttctgaacaccgaatattcaacaatgaccactagtttttgaatttcgaattgaatcaaaaaaaaaattagggttttaa 13169314  T
Q  101 gttttttgaattgggaaagaacattaacat 130  Q
    ||||||||||||||| ||||||||| ||||    
T  13169315 gttttttgaattggggaagaacattgacat 13169344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 4 - 130
Target Start/End: Original strand, 37087688 - 37087814
Alignment:
Q  4 ccatacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagtt 103  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||       ||| || ||||||||    
T  37087688 ccatacgcccaccacccatcatttctgaacaccgaatcttcaacaatgcccactgatttttgaatttcgaattgaatcaacaaaattagggttttaagtt 37087787  T
Q  104 ttttgaattgggaaagaacattaacat 130  Q
    |||||||||||| ||||||||| ||||    
T  37087788 ttttgaattggggaagaacattgacat 37087814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 51895105 - 51894979
Alignment:
Q  4 ccatacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagtt 103  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||       ||| || ||||||||    
T  51895105 ccatacgtccaccacccatcatttctaaacaccgaatcttcaacaatgaccactgatttttgaatttcgaattgaatcaaaaaagttagggttttaagtt 51895006  T
Q  104 ttttgaattgggaaagaacattaacat 130  Q
    || ||||||||| ||||||||| ||||    
T  51895005 ttctgaattggggaagaacattgacat 51894979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 6817417 - 6817291
Alignment:
Q  4 ccatacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagtt 103  Q
    ||||||| ||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||| |||||||||       ||| || |||||||     
T  6817417 ccatacgcccaccacccatcatttctatacaccgaatcttcaacaatgaccactgatttttgaatttcgaattgaatcaaaaaaattagggttttaagtc 6817318  T
Q  104 ttttgaattgggaaagaacattaacat 130  Q
    |||||||||||| ||||||||| ||||    
T  6817317 ttttgaattggggaagaacattgacat 6817291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 122
Target Start/End: Original strand, 15105902 - 15106020
Alignment:
Q  4 ccatacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagtt 103  Q
    |||||||||||||| ||||||||||| |||||  |||||||||||||||||||||||||||||||||| |||||||||       ||| || ||||||||    
T  15105902 ccatacgtccaccatccatcatttctaaacaccaaatcttcaacaatgaccactgatttttgaatttcgaattgaatcaaaaaaattagggttttaagtt 15106001  T
Q  104 ttttgaattgggaaagaac 122  Q
    |||||||||||| ||||||    
T  15106002 ttttgaattggggaagaac 15106020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 31237360 - 31237231
Alignment:
Q  1 tgtccatacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaa 100  Q
    |||||||||| |||| ||||||||||| ||||||| ||||||||||||||||||| || |||||||||||| |||||||||       ||| || |||||    
T  31237360 tgtccatacgcccactacccatcatttttgaacaccgaatcttcaacaatgaccattggtttttgaatttcgaattgaatcaaaaaaattagggttttaa 31237261  T
Q  101 gttttttgaattgggaaagaacattaacat 130  Q
    ||||||||||||||| ||||||||| ||||    
T  31237260 gttttttgaattggggaagaacattgacat 31237231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 45045437 - 45045323
Alignment:
Q  15 ccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagttttttgaattgg 114  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||        ||| || |||||||||||||||||||    
T  45045437 ccacccatcatttctgaacaccgaatcttcaacaatgaccactgatttttgaatttcgaattaaat-aaaaaaattagggttttaagttttttgaattgg 45045339  T
Q  115 gaaagaacattaacat 130  Q
    | ||||||||| ||||    
T  45045338 ggaagaacattgacat 45045323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 2870636 - 2870753
Alignment:
Q  12 ccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagttttttgaat 111  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||        ||| || |||||| |||||||||    
T  2870636 ccaccacccatcatttctgaacaccgaatcttcaacaatgaccacttatttttgaatttcgaattgaataaaaaaaattagggttttaag-tttttgaat 2870734  T
Q  112 tgggaaagaacattaacat 130  Q
    |||| ||||||||| ||||    
T  2870735 tggggaagaacattgacat 2870753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 3012381 - 3012267
Alignment:
Q  16 cacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagttttttgaattggg 115  Q
    |||||||||||| ||||||| || |||||||||||||||||||||||||||||||| |||| ||||       ||| || ||||||||||||||||||||    
T  3012381 cacccatcatttttgaacaccgagtcttcaacaatgaccactgatttttgaatttcgaattaaatcaaaaaaattagggttttaagttttttgaattggg 3012282  T
Q  116 aaagaacattaacat 130  Q
     ||||||||| ||||    
T  3012281 gaagaacattgacat 3012267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 25277301 - 25277187
Alignment:
Q  15 ccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagttttttgaattgg 114  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||       ||| || | |||||||||||||||||    
T  25277301 ccacccatcatttctgaacaccgaatcttcaacaatgaccactgatttttgaattttgaattgaatc-aaacaattagggttctaagttttttgaattgg 25277203  T
Q  115 gaaagaacattaacat 130  Q
    | ||||||||| ||||    
T  25277202 ggaagaacattgacat 25277187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 50554718 - 50554592
Alignment:
Q  4 ccatacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagtt 103  Q
    ||||||| |||||||  ||||||| ||||||| |||||||||||||||||||||  |||||||||||||||||||||        ||| || ||||||||    
T  50554718 ccatacgcccaccactaatcatttatgaacaccgaatcttcaacaatgaccactagtttttgaatttcaaattgaataaaaaaaattagggttttaagtt 50554619  T
Q  104 ttttgaattgggaaagaacattaacat 130  Q
    |||||||||||| ||||||||| ||||    
T  50554618 ttttgaattggggaagaacattgacat 50554592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 122
Target Start/End: Complemental strand, 52642442 - 52642324
Alignment:
Q  4 ccatacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagtt 103  Q
    ||||||| |||||||||||||||||| ||||   |||||||||||||||||||||||||||||||||| |||||||||       ||| || ||||||||    
T  52642442 ccatacgcccaccacccatcatttctaaacatcaaatcttcaacaatgaccactgatttttgaatttcgaattgaatcaaaaaaattagggttttaagtt 52642343  T
Q  104 ttttgaattgggaaagaac 122  Q
    |||||||||| | ||||||    
T  52642342 ttttgaattgaggaagaac 52642324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 130
Target Start/End: Original strand, 37345526 - 37345640
Alignment:
Q  15 ccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagttttttgaattgg 114  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||  |||||||||       ||| || | |||||||||||||||||    
T  37345526 ccacccatcatttatgaacaccgaatcttcaacaatgaccactgatttttgaattttgaattgaatc-aaacaattagggttctaagttttttgaattgg 37345624  T
Q  115 gaaagaacattaacat 130  Q
    | ||||||||| ||||    
T  37345625 ggaagaacattgacat 37345640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 130
Target Start/End: Complemental strand, 30598874 - 30598749
Alignment:
Q  5 catacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagttt 104  Q
    |||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||       ||| || |||||||||    
T  30598874 catacgcccaccacccatcatttctgaacaccgaatcttcaataatgaccactgatttttgaatttcgaattgaatcaaaaaaattagggttttaagttt 30598775  T
Q  105 tttgaattgggaaagaacattaacat 130  Q
    ||||||||||| ||||||||| ||||    
T  30598774 tttgaattggggaagaacattgacat 30598749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 130
Target Start/End: Original strand, 21350173 - 21350299
Alignment:
Q  4 ccatacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagtt 103  Q
    ||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||       ||| || ||||||||    
T  21350173 ccatacgcccaccacccatcatttctgaacaccgaatcttcaacgatgaccactgatttttgaatttcgaattgaatcaaaaaaattagggttttaagtt 21350272  T
Q  104 ttttgaattgggaaagaacattaacat 130  Q
    |||||||||||| ||| ||||| ||||    
T  21350273 ttttgaattggggaagtacattgacat 21350299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 130
Target Start/End: Original strand, 43766600 - 43766726
Alignment:
Q  4 ccatacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagtt 103  Q
    ||||||| ||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||| || ||||||       ||| || ||||||||    
T  43766600 ccatacgcccatcacccatcatttctaaacattgaatcttcaacaatgaccactgatttttgaatttcgaactgaatcaaaaaaattagggttttaagtt 43766699  T
Q  104 ttttgaattgggaaagaacattaacat 130  Q
    |||||||||||| ||||||||| ||||    
T  43766700 ttttgaattggggaagaacattgacat 43766726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 23292109 - 23292033
Alignment:
Q  4 ccatacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaat 80  Q
    ||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  23292109 ccatacgcccaccacctatcatttctgaacaccgaatcttcaacaatgaccactgatttttgaatttcgaattgaat 23292033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 2378500 - 2378618
Alignment:
Q  12 ccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagttttttgaat 111  Q
    ||||||| |||||||||||| ||| |||||||||||||||||||||| |||||||||||| |||||||||       ||| || ||||||||||||||||    
T  2378500 ccaccactcatcatttctgaccaccgaatcttcaacaatgaccactggtttttgaatttcgaattgaatcaaaaaaattagggttttaagttttttgaat 2378599  T
Q  112 tgggaaagaacattaacat 130  Q
    | || ||||||||| ||||    
T  2378600 tagggaagaacattgacat 2378618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 27897730 - 27897604
Alignment:
Q  4 ccatacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagtt 103  Q
    ||||||| ||||||| |||||||||| ||||| |||||||||||||||||||||  |||||||||||| |||||||||       ||| || ||||||||    
T  27897730 ccatacgcccaccactcatcatttctaaacaccgaatcttcaacaatgaccactagtttttgaatttcgaattgaatcaaaaaaattatggttttaagtt 27897631  T
Q  104 ttttgaattgggaaagaacattaacat 130  Q
    |||| ||||||| ||||||||| ||||    
T  27897630 tttttaattggggaagaacattgacat 27897604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 122
Target Start/End: Original strand, 42282051 - 42282169
Alignment:
Q  4 ccatacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagtt 103  Q
    ||||||| |||||||| |||||||||||||||  ||||||||||||||||| |||||||||||||||| ||||||||        ||| || ||||||||    
T  42282051 ccatacgcccaccacctatcatttctgaacaccaaatcttcaacaatgaccgctgatttttgaatttcgaattgaataaaaaaaattagggttttaagtt 42282150  T
Q  104 ttttgaattgggaaagaac 122  Q
    |||||||||||| ||||||    
T  42282151 ttttgaattggggaagaac 42282169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 122
Target Start/End: Original strand, 51685929 - 51686047
Alignment:
Q  4 ccatacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagtt 103  Q
    ||||||| |||||||||||||||| ||||||   |||||||||| |||| |||||||||||||||||| |||||||||       ||| || ||||||||    
T  51685929 ccatacgcccaccacccatcatttatgaacatcaaatcttcaacgatgatcactgatttttgaatttcgaattgaatcaaaaaaattagggttttaagtt 51686028  T
Q  104 ttttgaattgggaaagaac 122  Q
    |||||||||||| ||||||    
T  51686029 ttttgaattggggaagaac 51686047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 24846125 - 24846202
Alignment:
Q  4 ccatacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatc 81  Q
    ||||||||||||||||||||||||||||||||  || ||| |||||| |||||||||||||| ||||| |||||||||    
T  24846125 ccatacgtccaccacccatcatttctgaacaccaaagcttgaacaataaccactgatttttggatttcgaattgaatc 24846202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 41 - 130
Target Start/End: Original strand, 17516561 - 17516650
Alignment:
Q  41 cttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagttttttgaattgggaaagaacattaacat 130  Q
    ||||||||||||||||||||||||||||||| |||||||||       ||| || ||||||||||||||||| || ||||||||| ||||    
T  17516561 cttcaacaatgaccactgatttttgaatttcgaattgaatcaaaaaaattagggttttaagttttttgaattagggaagaacattgacat 17516650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 132
Target Start/End: Complemental strand, 44268476 - 44268391
Alignment:
Q  45 aacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagttttttgaattgggaaagaacattaacatta 132  Q
    |||||||||||||| |||||||||||  |||||||||       |  ||| |||||||||||||||||||||||||||||| ||||||    
T  44268476 aacaatgaccactggtttttgaattttgaattgaatcaaaaaaat--agggtttaagttttttgaattgggaaagaacattgacatta 44268391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 13485052 - 13484976
Alignment:
Q  4 ccatacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaat 80  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  13485052 ccatacgcccaccacccatcatttctgaacaccgaatcttcaacaatgaccactgatttttgaatttcaaattgaat 13484976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 22273459 - 22273577
Alignment:
Q  12 ccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagttttttgaat 111  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||       ||| |  ||||||||| ||||||    
T  22273459 ccaccacccaccatttctgaacaccgaatcttcaacaatgaccactgatttttgaatttcgaattgaatcaaaaaaattaggattttaagtttcttgaat 22273558  T
Q  112 tgggaaagaacattaacat 130  Q
    |||| ||||||||| ||||    
T  22273559 tggggaagaacattgacat 22273577  T

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Target: chr8; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 41041250 - 41041124
Alignment:
Q  4 ccatacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagtt 103  Q
    ||||||| ||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||        ||| || ||||||||    
T  41041250 ccatacgcccaccacccgtcatttctgaacaacgaatcttcaacaatgaccactgatttttgaatttcgaattgaataaaaaaaattagggttttaagtt 41041151  T
Q  104 ttttgaattgggaaagaacattaacat 130  Q
     ||||||||||| ||||||||| ||||    
T  41041150 atttgaattggggaagaacattgacat 41041124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 130
Target Start/End: Original strand, 5037626 - 5037741
Alignment:
Q  15 ccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagttttttgaattgg 114  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||        ||| || ||||||||||||||||||     
T  5037626 ccacccatcatttctgaacaccgaatctttaacaatgaccactgatttttgaatttcgaattgaataaaaaaaattagggttttaagttttttgaattga 5037725  T
Q  115 gaaagaacattaacat 130  Q
    | ||||||||| ||||    
T  5037726 ggaagaacattgacat 5037741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 5 - 130
Target Start/End: Original strand, 42942979 - 42943103
Alignment:
Q  5 catacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagttt 104  Q
    |||||| |||||||| ||||||| ||||||||||||||| ||||| ||||||||||||||||||||| ||||||||        ||| || |||||||||    
T  42942979 catacgcccaccacc-atcatttttgaacactgaatctttaacaacgaccactgatttttgaatttcgaattgaataaaaaaaattagggttttaagttt 42943077  T
Q  105 tttgaattgggaaagaacattaacat 130  Q
    ||||||||||  ||||||||| ||||    
T  42943078 tttgaattggagaagaacattgacat 42943103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 26239248 - 26239172
Alignment:
Q  4 ccatacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaat 80  Q
    ||||||| ||||||||||||||||||||||||  |||||||||||||||||||| |||||| |||||  ||||||||    
T  26239248 ccatacgcccaccacccatcatttctgaacaccaaatcttcaacaatgaccactaattttttaattttgaattgaat 26239172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 41824469 - 41824360
Alignment:
Q  13 caccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagttttttgaatt 112  Q
    ||||||||||||||| ||||||   ||||||||| |||||||||| ||||||||||||| |||||||||       ||| || |||||||||||||||||    
T  41824469 caccacccatcatttatgaacatcaaatcttcaataatgaccactcatttttgaatttcgaattgaatcaaaaaaattagggttttaagttttttgaatt 41824370  T
Q  113 gggaaagaac 122  Q
    ||| ||||||    
T  41824369 ggggaagaac 41824360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 40338347 - 40338225
Alignment:
Q  1 tgtccatacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaa 100  Q
    |||||||||| ||||||||||||| ||||||||||  ||||||||||||||||      |||||||||||| |||| ||||       ||| || |||||    
T  40338347 tgtccatacgcccaccacccatca-ttctgaacaccaaatcttcaacaatgac------tttttgaatttcgaattaaatcaaaaaaattagggttttaa 40338255  T
Q  101 gttttttgaattgggaaagaacattaacat 130  Q
     |||||||||||||| ||||||||| ||||    
T  40338254 attttttgaattggggaagaacattgacat 40338225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 122
Target Start/End: Complemental strand, 3152453 - 3152384
Alignment:
Q  53 ccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagttttttgaattgggaaagaac 122  Q
    ||||||||||||||||||| |||||||||       |||||  |||||||||||||||||||| ||||||    
T  3152453 ccactgatttttgaatttcgaattgaatcaaaaaaattaagattttaagttttttgaattggggaagaac 3152384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 130
Target Start/End: Original strand, 1065 - 1191
Alignment:
Q  4 ccatacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagtt 103  Q
    ||||||| ||||| ||| |||||||||||||| |||||||||||||||||||||| |||||||||||  |||||||||       ||| ||  |||| ||    
T  1065 ccatacgcccaccgcccttcatttctgaacaccgaatcttcaacaatgaccactggtttttgaattttgaattgaatcaaaaaaattagggtcttaaatt 1164  T
Q  104 ttttgaattgggaaagaacattaacat 130  Q
    |||||||||||| ||||||||| ||||    
T  1165 ttttgaattggggaagaacattgacat 1191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 9463 - 9575
Alignment:
Q  19 ccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatc-nnnnnnnttaaggctttaagttttttgaattgggaa 117  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||||  |||||||||        ||| || |||||||||||||||||||| |    
T  9463 ccatcatttctgaacaccgaatctttaacaatgaccactgatttttgaatttataattgaatcaaaaaaaattagggttttaagttttttgaattgggga 9562  T
Q  118 agaacattaacat 130  Q
    | |||||| ||||    
T  9563 aaaacattgacat 9575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 107199 - 107084
Alignment:
Q  7 tacgtccaccacccatcatttctgaacactgaatcttcaacaatgaccactgatttttgaatttcaaattgaatcnnnnnnnttaaggctttaagttttt 106  Q
    |||| |||||||||||||||||| |||||  ||| |||||||||||||||||||||||||||||| ||| ||||        |||  | |||||||||||    
T  107199 tacgcccaccacccatcatttctaaacaccaaatgttcaacaatgaccactgatttttgaatttcgaatggaataaaaaaaattagagttttaagttttt 107100  T
Q  107 tgaattgggaaagaac 122  Q
    ||||||||| ||||||    
T  107099 tgaattggggaagaac 107084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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