View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20665_high_193 (Length: 227)
Name: NF20665_high_193
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_high_193 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 7 - 215
Target Start/End: Complemental strand, 38090495 - 38090287
Alignment:
| Q |
7 |
tccaaggcttccaacactatattatagtcaccaacacatcaaaaacaggatagactttcactataatgttgatggaatattaacaaaatgtcaaaattaa |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38090495 |
tccaaggcttccaacactatattatagtcaccaacacatcaaaaacatgttagactttcactataatgttgatggaatattaacaaaatgtcaaaattaa |
38090396 |
T |
|
| Q |
107 |
accattatatcaacaacacaaacctgatgccatgaccaggtccacaattaatcgcagttatgttaatgaatttggaaccactgttaatggcaatgcaatc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38090395 |
accattatatcaacaacacaaacctgatgccatgaccaggtccacaattaatcgcagttatgttaatgaatttggaaccactgttaatggcaatgcaatc |
38090296 |
T |
|
| Q |
207 |
gtcgcctat |
215 |
Q |
| |
|
||||||||| |
|
|
| T |
38090295 |
gtcgcctat |
38090287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 32730522 - 32730434
Alignment:
| Q |
127 |
aacctgatgccatgaccaggtccacaattaatcgcagttatgttaatgaatttggaaccactgttaatggcaatgcaatcgtcgcctat |
215 |
Q |
| |
|
||||| |||||||||||||||||||| | ||| ||||||||| ||||| | || |||| |||||||||||||||||||||| ||||| |
|
|
| T |
32730522 |
aaccttatgccatgaccaggtccacactgaatatcagttatgtagatgaactcggtaccattgttaatggcaatgcaatcgtcacctat |
32730434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 215
Target Start/End: Original strand, 19056789 - 19056876
Alignment:
| Q |
128 |
acctgatgccatgaccaggtccacaattaatcgcagttatgttaatgaatttggaaccactgttaatggcaatgcaatcgtcgcctat |
215 |
Q |
| |
|
||||||||||||| |||||||||||| || ||||||||||||| || ||||| ||| |||||| || ||||||||||| ||||| |
|
|
| T |
19056789 |
acctgatgccatggccaggtccacaaagaacaccagttatgttaataaaattggagccagagttaattgcgatgcaatcgtcacctat |
19056876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University