View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20665_high_20 (Length: 525)

Name: NF20665_high_20
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20665_high_20
NF20665_high_20
[»] chr2 (3 HSPs)
chr2 (1-494)||(1239237-1239733)
chr2 (430-500)||(16069263-16069333)
chr2 (429-505)||(21616737-21616813)
[»] chr1 (4 HSPs)
chr1 (428-505)||(7918218-7918295)
chr1 (427-506)||(47989472-47989550)
chr1 (427-496)||(13997867-13997936)
chr1 (427-500)||(52903229-52903302)
[»] chr8 (3 HSPs)
chr8 (427-494)||(4786344-4786411)
chr8 (417-506)||(44067490-44067579)
chr8 (465-505)||(24669408-24669448)
[»] chr4 (5 HSPs)
chr4 (427-502)||(40742569-40742644)
chr4 (433-505)||(21539879-21539951)
chr4 (411-505)||(24343482-24343576)
chr4 (427-480)||(5775364-5775417)
chr4 (429-505)||(36635299-36635375)
[»] scaffold0022 (1 HSPs)
scaffold0022 (427-505)||(90818-90896)
[»] chr7 (9 HSPs)
chr7 (427-505)||(26329388-26329466)
chr7 (427-505)||(15902797-15902875)
chr7 (433-505)||(5235961-5236033)
chr7 (424-475)||(8239053-8239104)
chr7 (427-505)||(2425739-2425817)
chr7 (427-504)||(1433430-1433507)
chr7 (427-504)||(22602716-22602793)
chr7 (428-505)||(22868017-22868094)
chr7 (417-505)||(43249968-43250056)
[»] chr6 (6 HSPs)
chr6 (427-506)||(9658853-9658932)
chr6 (427-506)||(19147816-19147895)
chr6 (411-505)||(9027153-9027247)
chr6 (427-505)||(5732516-5732594)
chr6 (410-505)||(6389718-6389814)
chr6 (428-472)||(17302355-17302399)
[»] chr5 (6 HSPs)
chr5 (427-499)||(16734847-16734921)
chr5 (429-506)||(19293431-19293508)
chr5 (429-506)||(15410456-15410533)
chr5 (410-471)||(39695988-39696049)
chr5 (417-505)||(25863179-25863267)
chr5 (428-500)||(27144443-27144515)
[»] scaffold0039 (1 HSPs)
scaffold0039 (427-493)||(84979-85045)
[»] chr3 (5 HSPs)
chr3 (410-505)||(34307769-34307864)
chr3 (427-505)||(8383232-8383310)
chr3 (427-505)||(11658790-11658868)
chr3 (411-505)||(14223843-14223937)
chr3 (421-505)||(24205041-24205125)


Alignment Details
Target: chr2 (Bit Score: 435; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Original strand, 1239237 - 1239733
Alignment:
Q  1 agggtgtgtctgtatttatagtgaatgaag---attccaaaggtgaattaaagcggcagtgttcgtttgtttggttacttacacgtcatcatctacgttg 97  Q
    ||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1239237 agggtgtgtctgtatttatagtgaatgaagaagattccaaaggtgaattaaagcggcagtgtttgtttgtttggttacttacacgtcatcatctacgttg 1239336  T
Q  98 ttactatagaaaaacttacacgttttagcttcttatttgacacgtgcgaaattggtcttcgtgggcctcaataataagggtttgcctctactgcatgctg 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1239337 ttactatagaaaaacttacacgttttagcttcttatttgacacgtgcgaaattggtcttcgtgggcctcaataataagggtttgcctctactgcatgctg 1239436  T
Q  198 ctatgcatgaaactcagtgagatattaacttaattactctatttgtaacttctccatttccacctcttcaataactccaccatatatattaattcatgct 297  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1239437 ctatgcatgaaactcagtgagatattaacttgattactctatttgtaacttctccatttccacctcttcaataactccaccatatatattaattcatgct 1239536  T
Q  298 ctctgcgcgaggactgatttcattttccatgataatcaatttgtagtagtattgcgatttatgaagcacaaaaactcttcggattacacatgtctcagta 397  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||| ||||||||| |||||||||||||||||||    
T  1239537 ctctgcgcgaggactgatttcattttccatgataatcaacttgtagtagtattgcaatctatgaagcacagaaactcttcagattacacatgtctcagta 1239636  T
Q  398 tgagacaaggagcgtgtcggacaccgacacgacacatataattacacatgattatatgattttcttcaattattaatgatgtccgcgtgtcagtgtc 494  Q
    | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||    
T  1239637 tcagacaagtagcgtgtcggacaccgacacgacacatataattacacatgattatatgattttcttaaattattaatgatgtcggcgtgtccgtgtc 1239733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 430 - 500
Target Start/End: Original strand, 16069263 - 16069333
Alignment:
Q  430 cacatataattacacatgattatatgattttcttcaattattaatgatgtccgcgtgtcagtgtctgtgtc 500  Q
    |||| ||||||||||   ||||||||||||| || ||||||||| | |||| ||||||||||||| |||||    
T  16069263 cacaaataattacactgaattatatgatttttttaaattattaacggtgtcggcgtgtcagtgtccgtgtc 16069333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 429 - 505
Target Start/End: Complemental strand, 21616813 - 21616737
Alignment:
Q  429 acacatataattacacatgattatatgattttcttcaattattaatgatgtccgcgtgtcagtgtctgtgtcgtgtc 505  Q
    ||||||||||||||||   ||||| |||||||||  ||||||||  | |||| ||||||| ||||| ||||||||||    
T  21616813 acacatataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtccgtgtccgtgtcgtgtc 21616737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 428 - 505
Target Start/End: Original strand, 7918218 - 7918295
Alignment:
Q  428 gacacatataattacacatgattatatgattttcttcaattattaatgatgtccgcgtgtcagtgtctgtgtcgtgtc 505  Q
    |||||||||||||||||   ||||| |||||||||  |||||||| ||||||| |||||||| |||||||||||||||    
T  7918218 gacacatataattacactgaattatgtgattttctcaaattattagtgatgtcagcgtgtcattgtctgtgtcgtgtc 7918295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 506
Target Start/End: Complemental strand, 47989550 - 47989472
Alignment:
Q  427 cgacacatataattacacatgattatatgattttcttcaattattaatgatgtccgcgtgtcagtgtctgtgtcgtgtct 506  Q
    |||||| | |||||||||   ||||| ||||||| || |||||||| || |||| |||||||||||||||||||||||||    
T  47989550 cgacacttgtaattacactgaattatgtgatttttttaaattattattg-tgtcggcgtgtcagtgtctgtgtcgtgtct 47989472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 496
Target Start/End: Complemental strand, 13997936 - 13997867
Alignment:
Q  427 cgacacatataattacacatgattatatgattttcttcaattattaatgatgtccgcgtgtcagtgtctg 496  Q
    ||||||||||||||||||   ||||| ||||||| || ||| ||||| | |||| |||||||||||||||    
T  13997936 cgacacatataattacactgaattatgtgatttttttaaataattaacggtgtcggcgtgtcagtgtctg 13997867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 500
Target Start/End: Complemental strand, 52903302 - 52903229
Alignment:
Q  427 cgacacatataattacacatgattatatgattttcttcaattattaatgatgtccgcgtgtcagtgtctgtgtc 500  Q
    ||||||||||||||||||   ||||||||||||| || ||||||||| | | || |||||| |||||| |||||    
T  52903302 cgacacatataattacactgaattatatgattttattaaattattaacggtatcggcgtgttagtgtccgtgtc 52903229  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 427 - 494
Target Start/End: Original strand, 4786344 - 4786411
Alignment:
Q  427 cgacacatataattacacatgattatatgattttcttcaattattaatgatgtccgcgtgtcagtgtc 494  Q
    ||||||||||||||||||   ||||| |||||||||| ||||||||||| |||| |||||||||||||    
T  4786344 cgacacatataattacactgaattatgtgattttcttaaattattaatggtgtcggcgtgtcagtgtc 4786411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 506
Target Start/End: Complemental strand, 44067579 - 44067490
Alignment:
Q  417 gacaccgacacgacacatataattacacatgattatatgattttcttcaattattaatgatgtccgcgtgtcagtgtctgtgtcgtgtct 506  Q
    |||||||||||||||| |||||||||||   ||||| | |||||||  ||||||||    |||| ||||||||||||| |||| ||||||    
T  44067579 gacaccgacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtcggtgtggtgtct 44067490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 465 - 505
Target Start/End: Complemental strand, 24669448 - 24669408
Alignment:
Q  465 aattattaatgatgtccgcgtgtcagtgtctgtgtcgtgtc 505  Q
    ||||||||| | |||| ||||||||||||||||||||||||    
T  24669448 aattattaacggtgtcagcgtgtcagtgtctgtgtcgtgtc 24669408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 427 - 502
Target Start/End: Complemental strand, 40742644 - 40742569
Alignment:
Q  427 cgacacatataattacacatgattatatgattttcttcaattattaatgatgtccgcgtgtcagtgtctgtgtcgt 502  Q
    ||||||||||||||||||  ||||||||||||||||  ||||||||||| |||| |||| ||| |||| |||||||    
T  40742644 cgacacatataattacactagattatatgattttctcaaattattaatggtgtcggcgtttcaatgtccgtgtcgt 40742569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 433 - 505
Target Start/End: Original strand, 21539879 - 21539951
Alignment:
Q  433 atataattacacatgattatatgattttcttcaattattaatgatgtccgcgtgtcagtgtctgtgtcgtgtc 505  Q
    ||||||||||||   |||||||||||||||| ||||||||||| |||| || ||||||||||| ||| |||||    
T  21539879 atataattacactaaattatatgattttcttaaattattaatggtgtcggcatgtcagtgtctatgttgtgtc 21539951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 411 - 505
Target Start/End: Complemental strand, 24343576 - 24343482
Alignment:
Q  411 gtgtcggacaccgacacgacacatataattacacatgattatatgattttcttcaattattaatgatgtccgcgtgtcagtgtctgtgtcgtgtc 505  Q
    |||||||||||||||||||||| |||||||||||   ||||| | |||||||  ||||||||    |||| ||||||| | ||| ||||||||||    
T  24343576 gtgtcggacaccgacacgacacctataattacactgaattatgtaattttctcaaattattatccgtgtcggcgtgtcggcgtccgtgtcgtgtc 24343482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 480
Target Start/End: Original strand, 5775364 - 5775417
Alignment:
Q  427 cgacacatataattacacatgattatatgattttcttcaattattaatgatgtc 480  Q
    |||||||||||||||||| | ||||| |||||||||  ||||||||||| ||||    
T  5775364 cgacacatataattacacttaattatgtgattttctcaaattattaatggtgtc 5775417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 429 - 505
Target Start/End: Complemental strand, 36635375 - 36635299
Alignment:
Q  429 acacatataattacacatgattatatgattttcttcaattattaatgatgtccgcgtgtcagtgtctgtgtcgtgtc 505  Q
    ||||||||||||||||   ||||| |||||||||  |||||||| || |||  ||||||||||||| | ||||||||    
T  36635375 acacatataattacactgaattatgtgattttctcaaattattagtggtgttggcgtgtcagtgtccgagtcgtgtc 36635299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 427 - 505
Target Start/End: Complemental strand, 90896 - 90818
Alignment:
Q  427 cgacacatataattacacatgattatatgattttcttcaattattaatgatgtccgcgtgtcagtgtctgtgtcgtgtc 505  Q
    ||||| ||||||||||||   |||||||||||||||  ||||||||||| |||  | ||||||||||||||||||||||    
T  90896 cgacatatataattacactgaattatatgattttctcaaattattaatggtgttggtgtgtcagtgtctgtgtcgtgtc 90818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 427 - 505
Target Start/End: Original strand, 26329388 - 26329466
Alignment:
Q  427 cgacacatataattacacatgattatatgattttcttcaattattaatgatgtccgcgtgtcagtgtctgtgtcgtgtc 505  Q
    ||||||||||||||||||   ||| | || ||||||  ||||||||| |||||| ||||||||||||||||||||||||    
T  26329388 cgacacatataattacactgaattgtgtgtttttctcaaattattaacgatgtcggcgtgtcagtgtctgtgtcgtgtc 26329466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 427 - 505
Target Start/End: Complemental strand, 15902875 - 15902797
Alignment:
Q  427 cgacacatataattacacatgattatatgattttcttcaattattaatgatgtccgcgtgtcagtgtctgtgtcgtgtc 505  Q
    ||||||||||||||||||   ||||| ||||||| |  |||||||| || |||| || |||||||||||||||||||||    
T  15902875 cgacacatataattacactaaattatgtgattttatcaaattattattggtgtcggcatgtcagtgtctgtgtcgtgtc 15902797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 433 - 505
Target Start/End: Complemental strand, 5236033 - 5235961
Alignment:
Q  433 atataattacacatgattatatgattttcttcaattattaatgatgtccgcgtgtcagtgtctgtgtcgtgtc 505  Q
    ||||||||||||   ||||||| |||||||| ||||||||  | ||||  |||||||||||||||||||||||    
T  5236033 atataattacactaaattatataattttcttaaattattagcggtgtcgacgtgtcagtgtctgtgtcgtgtc 5235961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 475
Target Start/End: Original strand, 8239053 - 8239104
Alignment:
Q  424 acacgacacatataattacacatgattatatgattttcttcaattattaatg 475  Q
    |||||||||||||||||||||   |||||| ||||||||| |||||||||||    
T  8239053 acacgacacatataattacactgaattataagattttcttaaattattaatg 8239104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 505
Target Start/End: Original strand, 2425739 - 2425817
Alignment:
Q  427 cgacacatataattacacatgattatatgattttcttcaattattaatgatgtccgcgtgtcagtgtctgtgtcgtgtc 505  Q
    ||||||||||| || ||| | ||||| |||||||||  ||||||||| | || | |||||||||| |||||||||||||    
T  2425739 cgacacatatagttccacttaattatgtgattttctcaaattattaacggtgccggcgtgtcagtatctgtgtcgtgtc 2425817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 504
Target Start/End: Complemental strand, 1433507 - 1433430
Alignment:
Q  427 cgacacatataattacacatgattatatgattttcttcaattattaatgatgtccgcgtgtcagtgtctgtgtcgtgt 504  Q
    ||||||||||||||||||   || || |||||||||  ||||||||| | |||| |||||||| |||| |||||||||    
T  1433507 cgacacatataattacaccaaatgatgtgattttctcaaattattaacggtgtcggcgtgtcaatgtccgtgtcgtgt 1433430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 504
Target Start/End: Original strand, 22602716 - 22602793
Alignment:
Q  427 cgacacatataattacacatgattatatgattttcttcaattattaatgatgtccgcgtgtcagtgtctgtgtcgtgt 504  Q
    ||||||||||||||||||   ||||| |||||||||  ||| ||| | | |||| ||||||||||| |||||||||||    
T  22602716 cgacacatataattacactgaattatgtgattttctcaaataatttacggtgtcggcgtgtcagtgcctgtgtcgtgt 22602793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 505
Target Start/End: Complemental strand, 22868094 - 22868017
Alignment:
Q  428 gacacatataattacacatgattatatgattttcttcaattattaatgatgtccgcgtgtcagtgtctgtgtcgtgtc 505  Q
    |||||||||||||||||   ||||| |||||||||   ||||||| || |||| ||||||||||||| |||| |||||    
T  22868094 gacacatataattacactgaattatgtgattttctcatattattagtggtgtcggcgtgtcagtgtcggtgttgtgtc 22868017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 505
Target Start/End: Complemental strand, 43250056 - 43249968
Alignment:
Q  417 gacaccgacacgacacatataattacacatgattatatgattttcttcaattattaatgatgtccgcgtgtcagtgtctgtgtcgtgtc 505  Q
    |||||||||||||||| |||||||||||   ||||| | |||||||  ||||||||    |||| ||||||||||||| ||||| ||||    
T  43250056 gacaccgacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtccgtgtcttgtc 43249968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 427 - 506
Target Start/End: Complemental strand, 9658932 - 9658853
Alignment:
Q  427 cgacacatataattacacatgattatatgattttcttcaattattaatgatgtccgcgtgtcagtgtctgtgtcgtgtct 506  Q
    ||||| ||||||||||||   ||||| |||||||||| ||||||||  | |||| ||||||||||||| |||||||||||    
T  9658932 cgacaaatataattacactgaattatgtgattttcttaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtct 9658853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 427 - 506
Target Start/End: Complemental strand, 19147895 - 19147816
Alignment:
Q  427 cgacacatataattacacatgat-tatatgattttcttcaattattaatgatgtccgcgtgtcagtgtctgtgtcgtgtct 506  Q
    |||||||||||||||| | |||| |||||||||||||| ||||||||| | ||||   |||||| ||||||||||||||||    
T  19147895 cgacacatataattactc-tgatctatatgattttcttaaattattaacggtgtctttgtgtcactgtctgtgtcgtgtct 19147816  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 505
Target Start/End: Complemental strand, 9027247 - 9027153
Alignment:
Q  411 gtgtcggacaccgacac-gacacatataattacacatgattatatgattttcttcaattattaatgatgtccgcgtgtcagtgtctgtgtcgtgtc 505  Q
    ||||||||||| ||||| |||||||||||||||||   ||||| ||||| |||  ||||||||  | |||| ||||||||||||| ||||||||||    
T  9027247 gtgtcggacac-gacaccgacacatataattacacggaattatgtgattatctcaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtc 9027153  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 505
Target Start/End: Original strand, 5732516 - 5732594
Alignment:
Q  427 cgacacatataattacacatgattatatgattttcttcaattattaatgatgtccgcgtgtcagtgtctgtgtcgtgtc 505  Q
    ||||||||||||||||||   | ||| |||||||||  ||||||||| | |||| |||||||||||||  |||||||||    
T  5732516 cgacacatataattacactaaaatatgtgattttctcaaattattaacggtgtcggcgtgtcagtgtccatgtcgtgtc 5732594  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 505
Target Start/End: Complemental strand, 6389814 - 6389718
Alignment:
Q  410 cgtgtcgga-caccgacacgacacatataattacacatgattatatgattttcttcaattattaatgatgtccgcgtgtcagtgtctgtgtcgtgtc 505  Q
    ||||||||| |||||||||||||| ||| |||||||   ||||||| |||||||  ||||||||    |||| |||||| |||||| ||||||||||    
T  6389814 cgtgtcggaacaccgacacgacacctatgattacactaaattatatcattttctcaaattattatccgtgtcggcgtgtgagtgtccgtgtcgtgtc 6389718  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 428 - 472
Target Start/End: Complemental strand, 17302399 - 17302355
Alignment:
Q  428 gacacatataattacacatgattatatgattttcttcaattatta 472  Q
    ||||||||||||||||||  ||||| |||||||||| ||||||||    
T  17302399 gacacatataattacacaaaattatgtgattttcttaaattatta 17302355  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 427 - 499
Target Start/End: Complemental strand, 16734921 - 16734847
Alignment:
Q  427 cgacacatataattacaca--tgattatatgattttcttcaattattaatgatgtccgcgtgtcagtgtctgtgt 499  Q
    |||||||||||||||||||  ||||||||| |||||||| ||||||||| | |||| |||||| |||||| ||||    
T  16734921 cgacacatataattacacacttgattatataattttcttaaattattaacggtgtcggcgtgttagtgtccgtgt 16734847  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 429 - 506
Target Start/End: Original strand, 19293431 - 19293508
Alignment:
Q  429 acacatataattacacatgattatatgattttcttcaattattaatgatgtccgcgtgtcagtgtctgtgtcgtgtct 506  Q
    |||||||| ||||||| | ||||| | |||||||| |||||||| || |||| ||||||  |||||||||||||||||    
T  19293431 acacatatgattacacttaattatgttattttcttaaattattattggtgtcagcgtgttggtgtctgtgtcgtgtct 19293508  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 506
Target Start/End: Original strand, 15410456 - 15410533
Alignment:
Q  429 acacatataattacacatgattatatgattttcttcaattattaatgatgtccgcgtgtcagtgtctgtgtcgtgtct 506  Q
    |||||||| |||||||   || |||| |||||||| ||||||||  | |||| ||||||||||||| |||||||||||    
T  15410456 acacatatgattacactgaatcatataattttcttaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtct 15410533  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 471
Target Start/End: Original strand, 39695988 - 39696049
Alignment:
Q  410 cgtgtcggacaccgacacgacacatataattacacatgattatatgattttcttcaattatt 471  Q
    ||||||||||||||||||||||| ||| |||||||   ||||||| |||||||  |||||||    
T  39695988 cgtgtcggacaccgacacgacacctatgattacactaaattatatcattttctcaaattatt 39696049  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 505
Target Start/End: Complemental strand, 25863267 - 25863179
Alignment:
Q  417 gacaccgacacgacacatataattacacatgattatatgattttcttcaattattaatgatgtccgcgtgtcagtgtctgtgtcgtgtc 505  Q
    ||||| |||||||||| |||||||||||   ||||||| |||||||  ||||||||   |||||  ||||||  |||||||||||||||    
T  25863267 gacactgacacgacacttataattacactgaattatatcattttctcaaattattatacatgtcgacgtgtcgatgtctgtgtcgtgtc 25863179  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 428 - 500
Target Start/End: Complemental strand, 27144515 - 27144443
Alignment:
Q  428 gacacatataattacacatgattatatgattttcttcaattattaatgatgtccgcgtgtcagtgtctgtgtc 500  Q
    |||||||||||||||||   ||||| |||||| ||  ||||||||  | |||| |||||||||||||||||||    
T  27144515 gacacatataattacactaaattatgtgatttcctcaaattattagcggtgtcggcgtgtcagtgtctgtgtc 27144443  T

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Target: scaffold0039 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 427 - 493
Target Start/End: Original strand, 84979 - 85045
Alignment:
Q  427 cgacacatataattacacatgattatatgattttcttcaattattaatgatgtccgcgtgtcagtgt 493  Q
    ||||| |||||||||||||| |||||||||||||||| ||||| || || |||| ||||||| ||||    
T  84979 cgacatatataattacacataattatatgattttcttaaattagtagtggtgtcggcgtgtccgtgt 85045  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 505
Target Start/End: Original strand, 34307769 - 34307864
Alignment:
Q  410 cgtgtcggacaccgacacgacacatataattacacatgattatatgattttcttcaattattaatgatgtccgcgtgtcagtgtctgtgtcgtgtc 505  Q
    |||||| |||||||||||||||| |||||||||||   | ||| |||||||||  ||||||||  | |||| ||||||  ||||||||||| ||||    
T  34307769 cgtgtccgacaccgacacgacacttataattacactgaaatatgtgattttctcaaattattagcggtgtcagcgtgttcgtgtctgtgtcatgtc 34307864  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 505
Target Start/End: Complemental strand, 8383310 - 8383232
Alignment:
Q  427 cgacacatataattacacatgattatatgattttcttcaattattaatgatgtccgcgtgtcagtgtctgtgtcgtgtc 505  Q
    |||||| |||||||||||   |||||||||||||||  ||||||||  | |||| |||||||| |||| ||||||||||    
T  8383310 cgacacttataattacactgaattatatgattttctcaaattattagcggtgtcggcgtgtcaatgtccgtgtcgtgtc 8383232  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 505
Target Start/End: Complemental strand, 11658868 - 11658790
Alignment:
Q  427 cgacacatataattacacatgattatatgattttcttcaattattaatgatgtccgcgtgtcagtgtctgtgtcgtgtc 505  Q
    ||||||||||||| ||||   |||||  ||||||||  ||||||||| |||||  | ||||||||||||||||||||||    
T  11658868 cgacacatataatcacactgaattatgcgattttctcaaattattaacgatgttggtgtgtcagtgtctgtgtcgtgtc 11658790  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 411 - 505
Target Start/End: Original strand, 14223843 - 14223937
Alignment:
Q  411 gtgtcggacaccgacacgacacatataattacacatgattatatgattttcttcaattattaatgatgtccgcgtgtcagtgtctgtgtcgtgtc 505  Q
    |||||||||||||||||||||| ||| | |||||   |||||||  ||||||  ||||||||    |||| ||||||| ||||||||||||||||    
T  14223843 gtgtcggacaccgacacgacacttatgaatacactaaattatatcgttttctcaaattattatctgtgtcggcgtgtcggtgtctgtgtcgtgtc 14223937  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 505
Target Start/End: Original strand, 24205041 - 24205125
Alignment:
Q  421 ccgacacgacacatataattacacatgattatatgattttcttcaattattaatgatgtccgcgtgtcagtgtctgtgtcgtgtc 505  Q
    |||||||||||| |||||||||||   ||||| | |||||||  ||||||||    |||| ||||||||||||| ||||||||||    
T  24205041 ccgacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtccgtgtcgtgtc 24205125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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