View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_high_200 (Length: 213)
Name: NF20665_high_200
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_high_200 |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 7e-82; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 21 - 198
Target Start/End: Complemental strand, 31063574 - 31063397
Alignment:
| Q |
21 |
ataatttctgtttctgctgggggccaatctagtacaaattctgaacaaatttttactgatgaggtttcaataggtgcatttcatgcacttgctagaaata |
120 |
Q |
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| T |
31063574 |
ataatatctgtttctgctggaggcccatctagtacaaattctgaagaaatttttaccgacgaggtttcaataggtgcatttcatgcacttgctagaaata |
31063475 |
T |
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| Q |
121 |
tattattagttgcatctgcgggaaatgaaggacctacccctggaagtgttgttaatgttgctccttgggtattcacag |
198 |
Q |
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| T |
31063474 |
tattattagttgcatctgcgggaaatgaaggacctacccctggaagtgttgttaatgttgctccttgggtattcacag |
31063397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 21 - 196
Target Start/End: Complemental strand, 31108661 - 31108486
Alignment:
| Q |
21 |
ataatttctgtttctgctgggggccaatctagtacaaattctgaacaaatttttactgatgaggtttcaataggtgcatttcatgcacttgctagaaata |
120 |
Q |
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| T |
31108661 |
ataatatctgtttctgctggaggcccatctagtacaaattctgaagaaatttttactgacgagatttcaataggtgcatttcatgcacttgctagaaata |
31108562 |
T |
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| Q |
121 |
tattattagttgcatctgcgggaaatgaaggacctacccctggaagtgttgttaatgttgctccttgggtattcac |
196 |
Q |
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| T |
31108561 |
tattattagttgcatctgcgggaaatgaaggacctacccctggaagtgttgttaatgttgctccatgggtgttcac |
31108486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 24 - 196
Target Start/End: Complemental strand, 31146408 - 31146236
Alignment:
| Q |
24 |
atttctgtttctgctgggggccaatctagtacaaattctgaacaaatttttactgatgaggtttcaataggtgcatttcatgcacttgctagaaatatat |
123 |
Q |
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| T |
31146408 |
atttctgtttcggctggaggcaaacctaatacaaatcctgaagttatttttactgatgagatttcaataggtgcatttcatgcacttgctagaaatatat |
31146309 |
T |
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| Q |
124 |
tattagttgcatctgcgggaaatgaaggacctacccctggaagtgttgttaatgttgctccttgggtattcac |
196 |
Q |
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| T |
31146308 |
tattagttgcatcggctggaaatgaaggacctacccctggaagtgttactaatgttgctccatgggtgttcac |
31146236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 24 - 196
Target Start/End: Complemental strand, 31164234 - 31164062
Alignment:
| Q |
24 |
atttctgtttctgctgggggccaatctagtacaaattctgaacaaatttttactgatgaggtttcaataggtgcatttcatgcacttgctagaaatatat |
123 |
Q |
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| T |
31164234 |
atttctgtttcggctggaggcaaacctaatacaaatcctgaagttatttttactgatgagatttcaataggtgcatttcatgcacttgctagaaatatat |
31164135 |
T |
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| Q |
124 |
tattagttgcatctgcgggaaatgaaggacctacccctggaagtgttgttaatgttgctccttgggtattcac |
196 |
Q |
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| T |
31164134 |
tattagttgcatcggctggaaatgaaggacctacccctggaagtgttactaatgttgctccatgggtgttcac |
31164062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 31051112 - 31050934
Alignment:
| Q |
18 |
gatataatttctgtttctgctgggggccaatctagtacaaattctgaacaaatttttactgatgaggtttcaataggtgcatttcatgcacttgctagaa |
117 |
Q |
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| T |
31051112 |
gatataatctcagtttctgttggaggccgatctagttcaaattttgaagaaatttttaccgatgaaatttcaataggtgcatttcaggcattcgctaaaa |
31051013 |
T |
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| Q |
118 |
atatattattagttgcatctgcgggaaatgaaggacctacccctggaagtgttgttaatgttgctccttgggtattcac |
196 |
Q |
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| T |
31051012 |
acatattattagttgcatctgctggaaatggtggaccaacccctggaagtgttactaatgttgctccttgggtgttcac |
31050934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 69 - 197
Target Start/End: Original strand, 31201642 - 31201770
Alignment:
| Q |
69 |
atttttactgatgaggtttcaataggtgcatttcatgcacttgctagaaatatattattagttgcatctgcgggaaatgaaggacctacccctggaagtg |
168 |
Q |
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| T |
31201642 |
atttttacagacgaggtttcaattggagcattccatgcactttctagaaatatattattagttgcctctgcaggtaatgaaggaccaaccggtggaagtg |
31201741 |
T |
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| Q |
169 |
ttgttaatgttgctccttgggtattcaca |
197 |
Q |
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|||| ||||| ||||| |||||||||||| |
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| T |
31201742 |
ttgtgaatgtagctccatgggtattcaca |
31201770 |
T |
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