View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_high_24 (Length: 495)
Name: NF20665_high_24
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 19 - 486
Target Start/End: Complemental strand, 29468650 - 29468185
Alignment:
| Q |
19 |
acaatttctaaaagttaatgaatttctaagaatgcatcaactatttcaagatttattttccctcatcaagtggcataaatttctctacaaatatgttcaa |
118 |
Q |
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| T |
29468650 |
acaatttctaaaagttaatgaatttctaagaatgcatcaactatttcaatatttattttccctcatcaagtggcataaatttctctacaaatatgttcaa |
29468551 |
T |
|
| Q |
119 |
tatgttcaaaaaatattgtcaaacaagaaaaggttaatgttgtcttcatgcctcgttgagcttacaatgaaaggtttcaaaagacctaccggcatgtcca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29468550 |
tatgttcaaaaaatattgtcaaacaagaaaaggttaatgttgtcttcatgcctcgttgagcttacaatgaaaggtttcaaaagacctaccggcatgtcca |
29468451 |
T |
|
| Q |
219 |
acctataaagtttttgagcatcaacctcgaccaaaactaaaacactaccttatttgttgcacagctgaatcacaaagtatgtaannnnnnnngtccttat |
318 |
Q |
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| T |
29468450 |
acctataaagtttttgagcatcaacctcgaccaaaactaaaacactaccttatttctcgcacagctgaatcacaaagtatgtaa--ttttttgtccttat |
29468353 |
T |
|
| Q |
319 |
tacatgtcttcggcaagagaatcacacaattctcctctttttggcattgtttttcatttcctcgatgttgtcttcatgattaataacgcttgttccttct |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29468352 |
tacatgtcttcggcaagagaatcacacaattctcctctttttggcattgtttttcatttcctcgatgttgtcttcatgattaataacgcttgttccttct |
29468253 |
T |
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| Q |
419 |
tgaacttctagtgtgtttttaacaaacatatgcaatctaaacaatgtgtagtcgctctgtagtataat |
486 |
Q |
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| T |
29468252 |
tgaacttctagtgtgtttttaacaaacatatgcaatctaaacaatgtgtagtcgctctgtagtataat |
29468185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 2e-47; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 205 - 479
Target Start/End: Complemental strand, 14999603 - 14999333
Alignment:
| Q |
205 |
taccggcatgtccaacctataaagtttttgagcatcaacctcgaccaaaactaaaacactaccttatttgttgcacagctgaatcacaaagtatgtaann |
304 |
Q |
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|||| |||||||||||||| ||||||| ||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| | || | | |
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| T |
14999603 |
taccagcatgtccaacctaaaaagttt--gagcatcaacctcattcaaaactaaaaaactacattatttgttgcacagctgaatcata--gttttt---- |
14999512 |
T |
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| Q |
305 |
nnnnnngtccttattacatgtcttcggcaagagaatcacacaattctcctctttttggcattgtttttcatttcctcg------atgttgtcttcatgat |
398 |
Q |
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|| || |||||||||||| |||| |||||||||| |||| ||||||||||| ||||||||||| |||||||| |||||||||||||||| |
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| T |
14999511 |
--tttggttctgattacatgtctttggcatgagaatcacataattttcctctttttgtcattgtttttcgtttcctcggcctcaatgttgtcttcatgat |
14999414 |
T |
|
| Q |
399 |
taataacgcttgttccttcttgaacttctagtgtgtttttaacaaacatatgcaatctaaacaatgtgtagtcgctctgta |
479 |
Q |
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| T |
14999413 |
caatagcgcttgttccttcttgaacttctagcgtgtctttgacaaacatatacaatctcaacattgtgtagtcgctctgta |
14999333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 318 - 444
Target Start/End: Complemental strand, 13636992 - 13636866
Alignment:
| Q |
318 |
ttacatgtcttcggcaagagaatcacacaattctcctctttttggcattgtttttcatttcctcgatgttgtcttcatgattaataacgcttgttccttc |
417 |
Q |
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||||||||||| || ||||||||||||||||| | ||||||| | |||||||| | ||||||| |||||||||||||| ||| ||||||| ||||||| |
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| T |
13636992 |
ttacatgtctttggaaagagaatcacacaattttactcttttatgaattgttttccttttcctcagtgttgtcttcatgagtaacaacgcttattccttc |
13636893 |
T |
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| Q |
418 |
ttgaacttctagtgtgtttttaacaaa |
444 |
Q |
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|||||||||||||| |||||||||||| |
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| T |
13636892 |
ttgaacttctagtgagtttttaacaaa |
13636866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 378 - 477
Target Start/End: Original strand, 14741264 - 14741363
Alignment:
| Q |
378 |
cctcgatgttgtcttcatgattaataacgcttgttccttcttgaacttctagtgtgtttttaacaaacatatgcaatctaaacaatgtgtagtcgctctg |
477 |
Q |
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|||| ||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||| |||||| | | ||||||||||||||| |
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| T |
14741264 |
cctcaatgttgtcttcatgagtagcaacgcttgttccttcttgaacttctagtgaatttttaacaaacatatacaatctccatactgtgtagtcgctctg |
14741363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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