View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20665_high_3 (Length: 715)
Name: NF20665_high_3
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 503; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 132 - 698
Target Start/End: Original strand, 36724252 - 36724818
Alignment:
| Q |
132 |
actgtctacaagcatctataatgcatctaaattcaccattatcttatatgcttgttctaagagcatccacatctttcacaaagtctagagaaaaatctgt |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
36724252 |
actgtctacaagcatctataatgcatctaaattcactactatcttatatgcttgttctaagagcatccacatccttcacagagtctagagaaaaatctgt |
36724351 |
T |
|
| Q |
232 |
attatcaaattgaaggtctgatgtccactccaaagccgtatgcaaatcagatgcttcccctatgtcaacatcacaaagaggagagaaccaatatgttttt |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36724352 |
attatcaaattgaaggtctgatgtccactccaaagccgtatgcaaatcagatgcttcccctatgttaacatcacaaagaggagagaaccaatatgttttt |
36724451 |
T |
|
| Q |
332 |
gtaaaaataaagtctcgttcgtcattgcagatacacatttcaattcctactttgttcatagctgaagaaaatgaggcatcaatattgcatttgtaacggt |
431 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36724452 |
gtaaaaataaagtctcatgcgtcattgcagatacacatttcaattcctactttgttcatagctgaagaaaatgaggcatcaatattgcatttgtaacggt |
36724551 |
T |
|
| Q |
432 |
cgagggctggctttttccatcgaattatttcctagctgtttagattcggctagtttagggtaacgggagctccatgaccactgcagataatttgagccaa |
531 |
Q |
| |
|
||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
36724552 |
cgagggctggcgttttacatcgaattatttcctggctgtttagattcggctagtttagggtaacgggagctccatgaccactgcagataatttgagccga |
36724651 |
T |
|
| Q |
532 |
tctccaatcctcaagaagatgcgttacacgttcaaccacctgcatatttgtttcgttcctttgctggcaaagtttcaagttcctctatttcataaactcc |
631 |
Q |
| |
|
|||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
36724652 |
tctccaattctcaagaagatgcgttgctcgttcaaccacctgcatatttgtttcgttcctttgctggcaaagtttcaagttcctctctttcataaactcc |
36724751 |
T |
|
| Q |
632 |
ataaaactgtggtaaagagtttactttggctcaggctaagctggtgtaaaagggtaaagacaaccac |
698 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36724752 |
ataaaactgtggtaaagagtttactttggctcgggctaagctggtgtaaaagggtaaagacaaccac |
36724818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 12 - 698
Target Start/End: Complemental strand, 717603 - 716914
Alignment:
| Q |
12 |
acatcatcataggtgtgggagttagtattatgtgggactatctgagctaactcatgagcaacctcattagcctgactt-tattaaactcaatttgagagt |
110 |
Q |
| |
|
||||||||||| ||| | || ||| |||||||||| |||| ||||||||||| | || | | ||||||| || || |||||||||||| ||||||| |
|
|
| T |
717603 |
acatcatcataagtgagagatctagcattatgtggggctatatgagctaactcgtaagtgatcccattagcttgtctcctattaaactcaacatgagagt |
717504 |
T |
|
| Q |
111 |
tttgaaatctactatgaaataactgtctacaagcatctataatgcatctaaattcaccattatcttatatgcttgttctaagagcatccacatctttcac |
210 |
Q |
| |
|
||||||||||||| || ||||| |||||||| || ||||||| |||| |||||||| | ||||| || | | |||||| |||||| ||| | ||| |
|
|
| T |
717503 |
tttgaaatctactttggaataattgtctacattcaactataatacatccaaattcactactatctcctacacatcttctaaaagcatcaacaaccttctt |
717404 |
T |
|
| Q |
211 |
aaagtctagagaaaaatctgtattatcaaattgaaggtctgatgtccactccaaagccgtatgcaaatcagatgcttcccctatgtcaacatcacaaaga |
310 |
Q |
| |
|
| ||||||||| |||||| ||||||||||||||||| ||||||||||| |||| |||||| ||| || | |||||||||||| ||||||||||||| |
|
|
| T |
717403 |
agagtctagagctaaatctacattatcaaattgaaggtgtgatgtccacttcaaaatcgtatgtaaaccaactacttcccctatgttaacatcacaaaga |
717304 |
T |
|
| Q |
311 |
ggagagaaccaatatgtttttgtaaaaataaagtctcgttcgtcattgcagatacacatttcaattcctactttgttcatagctgaagaaaatgaggcat |
410 |
Q |
| |
|
|||||||||||| || |||||| || || |||||| | | | |||| | || |||||| ||||||| || ||||||||||| |||||||||||||||| |
|
|
| T |
717303 |
ggagagaaccaagatttttttgcaagaacaaagtcccctgcatcatcgtggaaacacatcccaattcccaccttgttcatagccgaagaaaatgaggcat |
717204 |
T |
|
| Q |
411 |
caatattgcatttgtaacggtcgagggctggctttttccatcgaattatttcctagctgtttagattcggctagtttagggtaacgggagctccatgacc |
510 |
Q |
| |
|
| ||| ||| ||||||||| ||| | ||| |||||||| || | ||||||| ||| |||||| || || |||| | |||| | ||||| |||| |
|
|
| T |
717203 |
cgataaagcacttgtaacggctgagtgttggatttttccactgatctgtttcctaactgcttagatccgactggtttctgttaacaagcgctccgcgacc |
717104 |
T |
|
| Q |
511 |
a-ctgcagataatttgagccaatctccaatcct-caagaagatgcgttacacgttcaaccacctgcatatttgtttcgttcctttgctggcaaagtttca |
608 |
Q |
| |
|
| ||| | ||||||||||| |||||||||| | ||||||| || | | | ||||||||||||||||| |||||||| ||| ||||| |||||||||| |
|
|
| T |
717103 |
acctgga-ataatttgagctgatctccaatcttccaagaaggtgtgatgctcgttcaaccacctgcatgtttgtttcattcttttgccaccaaagtttca |
717005 |
T |
|
| Q |
609 |
agttcc-tctatttcataaactccataaaactgtggtaaagagtttactttggctcaggctaagctggtgtaaaagggtaaagacaaccac |
698 |
Q |
| |
|
|||||| ||| || |||||||||||||||| ||| | |||||||| |||||||||| || ||||||||| | |||||||||||| ||||| |
|
|
| T |
717004 |
agttccttctcttccataaactccataaaaatgttgcaaagagttcactttggctcgagccaagctggtgcagaagggtaaagaccaccac |
716914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 90 - 615
Target Start/End: Complemental strand, 712314 - 711791
Alignment:
| Q |
90 |
tattaaactcaatttgagagttttgaaatctactatgaaataactgtctacaagcatctataatgcatctaaattcaccattatcttatatgcttgttct |
189 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| | ||||| |||| |||||| ||| |||||| |||| |||||||| | |||||| || | |||||| |
|
|
| T |
712314 |
tattaaactcaacatgagagttttaaaatctattttgaaacaactatctacatgcaagtataatacatccaaattcacaactatcttctacacatgttct |
712215 |
T |
|
| Q |
190 |
aagagcatccacatctttcacaaagtctagagaaaaatctgtattatcaaattgaaggtctgatgtccactccaaagccgtatgcaaatcagatgcttcc |
289 |
Q |
| |
|
|| |||||||||| | ||| | ||||||||| ||||||| ||||||||||||||||| ||||||||| ||||||| |||||| ||| | | ||||| |
|
|
| T |
712214 |
aaaagcatccacaaccttcttagagtctagagcaaaatctacattatcaaattgaaggtatgatgtccattccaaagtcgtatgaaaagaaactccttcc |
712115 |
T |
|
| Q |
290 |
cctatgtcaacatcacaaagaggagagaaccaatatgtttttgtaaaaataaagtctcgttcgtcattgcagatacacatttcaattcctactttgttca |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || | |||||| | | |||| |||||| ||||| |||||| || ||| ||| |
|
|
| T |
712114 |
cctatgtcaacatcacaaagaggagagaaccaatatgtttttgcaagaccaaagtcctctgcatcatcgcagatgcacatcccaattctcaccttg-tca |
712016 |
T |
|
| Q |
390 |
tagctgaagaaaatgaggcatcaatattgcatttgtaacggtcgagggctggctttttccatcgaattatttcctagctgtttagattcggctagtttag |
489 |
Q |
| |
|
|||||||||||||||||| |||| ||||||| |||||||| ||| | |||||||||||| ||| ||||||||| || ||| ||| | | |||| |
|
|
| T |
712015 |
tagctgaagaaaatgagg-atcactattgcacttgtaacgtctgagtgttggctttttccacggaactatttcctaactattttgatccaattggtttct |
711917 |
T |
|
| Q |
490 |
ggtaacgggagctccatgaccactgcagataatttgagccaatctccaatcctcaagaagatgcgttacacgttcaaccacctgcatatttgtttcgttc |
589 |
Q |
| |
|
| ||||||| |||||| ||| | |||||||||||| || | || ||||||| ||||| ||| || | ||||||||||||||||| |||||||||||| |
|
|
| T |
711916 |
gttaacgggtgctccacgactgcctcagataatttgacccggtatctaatcctcgagaaggtgcattgctcgttcaaccacctgcatgtttgtttcgttc |
711817 |
T |
|
| Q |
590 |
ctttgctggcaaagtttcaagttcct |
615 |
Q |
| |
|
||||||| ||| ||||||||||||| |
|
|
| T |
711816 |
ttttgctgccaaggtttcaagttcct |
711791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 14 - 145
Target Start/End: Original strand, 36723764 - 36723895
Alignment:
| Q |
14 |
atcatcataggtgtgggagttagtattatgtgggactatctgagctaactcatgagcaacctcattagcctgactttattaaactcaatttgagagtttt |
113 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||| | |||||| |||||| |||||||||||| || |||||||| |
|
|
| T |
36723764 |
atcatcataggtgtgagagctagtattatgtgggactatctgagctaactcgtgagcaatcccattagtctgactctattaaactcaacttaagagtttt |
36723863 |
T |
|
| Q |
114 |
gaaatctactatgaaataactgtctacaagca |
145 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
36723864 |
gaaatctactatgaaataactgtctacaagca |
36723895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 4e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 90 - 280
Target Start/End: Complemental strand, 14541248 - 14541058
Alignment:
| Q |
90 |
tattaaactcaatttgagagttttgaaatctactatgaaataactgtctacaagcatctataatgcatctaaattcaccattatcttatatgcttgttct |
189 |
Q |
| |
|
||||||||||||| ||||||||| ||| |||| ||||| | ||||||||| |||||||||| |||||||||| || |||||||| || |||||| |
|
|
| T |
14541248 |
tattaaactcaatacgagagtttttaaaattactttgaaacacttgtctacaaacatctataatacatctaaatttactattatcttctacatatgttct |
14541149 |
T |
|
| Q |
190 |
aagagcatccacatctttcacaaagtctagagaaaaatctgtattatcaaattgaaggtctgatgtccactccaaagccgtatgcaaatca |
280 |
Q |
| |
|
|| |||||||||| ||| | ||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
14541148 |
aaaagcatccacaatcttctaagagtctagagaaaaatatacattatcaaattgaaggtatgatgtccactccaaagccgtatgcaaatca |
14541058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 383 - 698
Target Start/End: Complemental strand, 14540433 - 14540114
Alignment:
| Q |
383 |
ttgttcatagctgaagaaaatgaggcatcaatattgcatttgtaacggtcgagggctggctttttccatcgaattatttcctagctgtttagattcggct |
482 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||| | ||| |||||||||| ||| | || | || ||| |||||||||| || | |
|
|
| T |
14540433 |
ttgttcatatatgaagaaaatgaggcatcgatattgcatttgtaatgcctgagtgctggcttttcccacccaactgttacctgactgtttagatctggtt |
14540334 |
T |
|
| Q |
483 |
agtttagggtaacgggagctccatgaccactgcagataatttgagccaatctccaatcctcaagaagatgcgttacacgttcaaccacctgcatatttgt |
582 |
Q |
| |
|
||| | | |||| | ||| |||||| | | |||||||||||| ||||||||||||||||||| || ||| | |||||| |||||||| ||||||| |
|
|
| T |
14540333 |
ggttcctgatgacggacgttccgcgaccaccgaaaataatttgagccgatctccaatcctcaagaaggtgtgttgctcgttcacccacctgcgtatttgt |
14540234 |
T |
|
| Q |
583 |
ttcgttcctttgctggcaaagtttcaagtt-cctctatttcataaactccataaaactgtggtaaaga---gtttactttggctcaggctaagctggtgt |
678 |
Q |
| |
|
|| |||| ||||||| ||||||||| |||| || || |||||||||||||||||| ||| ||||| ||| ||||| |||||| |||||||||||| |
|
|
| T |
14540233 |
tttgttcttttgctgccaaagtttccagttatttcccttccataaactccataaaactatggcaaagagttgttcacttttgctcagactaagctggtgt |
14540134 |
T |
|
| Q |
679 |
aaaagggtaaagacaaccac |
698 |
Q |
| |
|
| |||||||||||| ||||| |
|
|
| T |
14540133 |
agaagggtaaagaccaccac |
14540114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 186 - 452
Target Start/End: Complemental strand, 8267269 - 8267003
Alignment:
| Q |
186 |
ttctaagagcatccacatctttcacaaagtctagagaaaaatctgtattatcaaattgaaggtctgatgtccactccaaagccgtatgcaaatcagatgc |
285 |
Q |
| |
|
|||||| |||||||||| | ||| | |||||| | |||||| ||||||||| |||||||| ||||||| ||||| ||||||||| ||| || |
|
|
| T |
8267269 |
ttctaaaagcatccacaaccttcttagagtctaaaacaaaatccatattatcaagttgaaggtttgatgtctactcccgagccgtatgaaaaccaacaat |
8267170 |
T |
|
| Q |
286 |
ttcccctatgtcaacatcacaaagaggagagaaccaatatgtttttgtaaaaataaagtctcgttcgtcattgcagatacacatttcaattcctactttg |
385 |
Q |
| |
|
|| || ||||||||||||||| |||||||| || ||| ||||||| || || ||||||| | | |||| | |||||||| ||||||||||| || |
|
|
| T |
8267169 |
tttccatatgtcaacatcacatagaggagaaaatcaagcagtttttgcaagaacaaagtcttctgcatcatcacgaatacacatcccaattcctactatg |
8267070 |
T |
|
| Q |
386 |
ttcatagctgaagaaaatgaggcatcaatattgcatttgtaacggtcgagggctggctttttccatc |
452 |
Q |
| |
|
||| | ||||||||| || ||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
8267069 |
ttcggggatgaagaaaacgaagcatcaatattgcatttgtaacggtcggttgctggcttttcccatc |
8267003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 532 - 585
Target Start/End: Complemental strand, 29985012 - 29984959
Alignment:
| Q |
532 |
tctccaatcctcaagaagatgcgttacacgttcaaccacctgcatatttgtttc |
585 |
Q |
| |
|
|||||| || ||||||||||| || |||||||||| ||||||||||||||||| |
|
|
| T |
29985012 |
tctccattcatcaagaagatgtgtagcacgttcaacaacctgcatatttgtttc |
29984959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 223 - 322
Target Start/End: Original strand, 2087537 - 2087632
Alignment:
| Q |
223 |
aaaatctgtattatcaaattgaaggtctgatgtccactccaaagccgtatgcaaatcagatgcttcccctatgtcaacatcacaaagaggagagaaccaa |
322 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||| | ||||| ||||||||| |||||| || || ||||||||||||||||||||||||||| |
|
|
| T |
2087537 |
aaaatctattttatcaaattgaaggtctgatgtccattgcaaagttgtatgcaaa----ctgcttctccaatatcaacatcacaaagaggagagaaccaa |
2087632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 371 - 429
Target Start/End: Complemental strand, 36473975 - 36473917
Alignment:
| Q |
371 |
tcaattcctactttgttcatagctgaagaaaatgaggcatcaatattgcatttgtaacg |
429 |
Q |
| |
|
|||||||||||||||||||||| |||||| || ||||||||||| ||||||||| |||| |
|
|
| T |
36473975 |
tcaattcctactttgttcatagatgaagagaacgaggcatcaatgttgcatttgcaacg |
36473917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 515 - 638
Target Start/End: Complemental strand, 36473831 - 36473707
Alignment:
| Q |
515 |
cagataatttgagccaatctccaatcctcaagaagatgcgttacacgttcaaccacctgcatatttgtttcgttcctttgctggcaaagtttcaagttc- |
613 |
Q |
| |
|
||||||||||||||| || | |||| | ||||| ||| ||| | |||||||||||||||||||| ||||| ||| |||| || ||||| ||||| ||| |
|
|
| T |
36473831 |
cagataatttgagccgattttaaatctttaagaaaatgtgttgctcgttcaaccacctgcatattcgtttcattcttttgttgccaaagcttcaaattca |
36473732 |
T |
|
| Q |
614 |
ctctatttcataaactccataaaac |
638 |
Q |
| |
|
||| ||||| |||||||||||||| |
|
|
| T |
36473731 |
ttctctttcaaaaactccataaaac |
36473707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 260 - 322
Target Start/End: Complemental strand, 36474068 - 36474006
Alignment:
| Q |
260 |
tccaaagccgtatgcaaatcagatgcttcccctatgtcaacatcacaaagaggagagaaccaa |
322 |
Q |
| |
|
|||| ||||||||||||| | |||||||||||| ||||||||||||||||| || |||||| |
|
|
| T |
36474068 |
tccagagccgtatgcaaacccattgcttcccctatatcaacatcacaaagaggggaaaaccaa |
36474006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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