View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_high_32 (Length: 455)
Name: NF20665_high_32
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_high_32 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 13)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 363
Target Start/End: Original strand, 32156696 - 32157020
Alignment:
| Q |
20 |
cttaatagagcaggatcaagcctttctttgtgatttgttgtgaaaacaattatgtgttcttctccacagcacgaccaaagaccatctactgcattcaata |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32156696 |
cttaatagagcaggatcaagcctttctttgtgatttgttgtgaaaacaattatgtgttcttctccacagcatgaccaaagaccatctactgcattcaata |
32156795 |
T |
|
| Q |
120 |
gtcctgaaagtgtcacctgttgacattatcaacaaacgttaacgtaaattatgaacaaatgttagtctaaaattaaatcttggt--tatcacatttcatg |
217 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||| || | | |||||| |
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| T |
32156796 |
gtcctgaaagtgtcacctgttgac---------------------aaattatgaacaaatgttaggttcaaattaaatcttggtgacattatagttcatg |
32156874 |
T |
|
| Q |
218 |
atatccagaatattatatcctcgtagggtattagtcacgttcttatcaacaggaataaaatttgttggctaaattatgactgtagttaaatatatctaaa |
317 |
Q |
| |
|
|| |||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32156875 |
atgtccagaatattatatcttcgttgggtatttgtcacgttcttatcaacaggaataaaatttgttggctaaattatgactgtagttaaatatatctaag |
32156974 |
T |
|
| Q |
318 |
ctagattcatgtagggttgaattactctaaatatcttctactttta |
363 |
Q |
| |
|
|||||||||||||||||||||||| | | ||||||||||| ||||| |
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|
| T |
32156975 |
ctagattcatgtagggttgaattatttttaatatcttctagtttta |
32157020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 241
Target Start/End: Original strand, 32118776 - 32118997
Alignment:
| Q |
20 |
cttaatagagcaggatcaagcctttctttgtgatttgttgtgaaaacaattatgtgttcttctccacagcacgaccaaagaccatctactgcattcaata |
119 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| || |||||||||| |
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| T |
32118776 |
cttaatagagcaggatcaagcctgtctttgtgatttgttgtgaatacaattatgtgttcttctccgcagcatgaccaaagaccatcaacagcattcaata |
32118875 |
T |
|
| Q |
120 |
gtcctgaaagtgtcacctgttgacattatcaacaaacgttaacgtaaattatgaacaaatgttagtctaaaattaaatcttggttatcacatttcatgat |
219 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32118876 |
gtcctgaaagtgtcacctgttgacaatatcaacaaacgttaacgtaaattatgaacaaatgttagtctaaaattaaatcttggttataacatttcatgat |
32118975 |
T |
|
| Q |
220 |
atccagaatattatatcctcgt |
241 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
32118976 |
atccagaatattatatcctcgt |
32118997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 32174472 - 32174613
Alignment:
| Q |
20 |
cttaatagagcaggatcaagcctttctttgtgatttgttgtgaaaacaattatgtgttcttctccacagcacgaccaaagaccatctactgcattcaata |
119 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32174472 |
cttaacagagcaggatcaagcctgtctttgtgatttgttgtgaatacaattatgtgttcttctccacagcacgaccaaagaccatctactgcattcaata |
32174571 |
T |
|
| Q |
120 |
gtcctgaaagtgtcacctgttgacattatcaacaaacgttaa |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32174572 |
gtcctgaaagtgtcacctgttgacattatcaacaaacgttaa |
32174613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 286 - 448
Target Start/End: Original strand, 32119005 - 32119162
Alignment:
| Q |
286 |
ctaaattatgactgtagttaaatatatctaaactagattcatgtagggttgaattactctaaatatcttctacttttagtatgaatgaaactcaaagatg |
385 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32119005 |
ctaaattatgactgttgttaaatata-----actagattcatgtagggttgaataattctaaatatcttctacttttagtatgaatgaaactcaaagatg |
32119099 |
T |
|
| Q |
386 |
aatgatatatttgacgagaaatgcataccttattgtctccattgacttctttctcttcatctc |
448 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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|
| T |
32119100 |
aatgatatatttgacgagaaatgcataccttattgtctccattaacttctttctcttcttctc |
32119162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 26 - 161
Target Start/End: Original strand, 32182564 - 32182699
Alignment:
| Q |
26 |
agagcaggatcaagcctttctttgtgatttgttgtgaaaacaattatgtgttcttctccacagcacgaccaaagaccatctactgcattcaatagtcctg |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||| |||||||||||||||| |
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| T |
32182564 |
agagcaggatcaagcctttctttgtgatttgttgtgaaaacaattatgtgttcctctccacaacatgaccaaagaccatctgtcgcattcaatagtcctg |
32182663 |
T |
|
| Q |
126 |
aaagtgtcacctgttgacattatcaacaaacgttaa |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
32182664 |
aaagtgtcacctgttgacattatcaacaaacgttaa |
32182699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 20 - 139
Target Start/End: Complemental strand, 32212023 - 32211904
Alignment:
| Q |
20 |
cttaatagagcaggatcaagcctttctttgtgatttgttgtgaaaacaattatgtgttcttctccacagcacgaccaaagaccatctactgcattcaata |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32212023 |
cttaatagagcaggatcaagcctttctttgtgatttgttgtgacaacaattatgtgttcttctccacagcacgaccaaagaccatctactgcattcaata |
32211924 |
T |
|
| Q |
120 |
gtcctgaaagtgtcacctgt |
139 |
Q |
| |
|
|||| |||||||||| |||| |
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| T |
32211923 |
gtcccgaaagtgtcatctgt |
32211904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 26 - 142
Target Start/End: Original strand, 32110518 - 32110634
Alignment:
| Q |
26 |
agagcaggatcaagcctttctttgtgatttgttgtgaaaacaattatgtgttcttctccacagcacgaccaaagaccatctactgcattcaatagtcctg |
125 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
32110518 |
agagcaggatcaagtctgtctttgtgatttgttgtgaaaacaattatgtgttcttctccacagcatgaccaaagaccatctactgcattcaatagtcctg |
32110617 |
T |
|
| Q |
126 |
aaagtgtcacctgttga |
142 |
Q |
| |
|
||||||||| ||||||| |
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|
| T |
32110618 |
aaagtgtcatctgttga |
32110634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 26 - 142
Target Start/End: Complemental strand, 32206942 - 32206826
Alignment:
| Q |
26 |
agagcaggatcaagcctttctttgtgatttgttgtgaaaacaattatgtgttcttctccacagcacgaccaaagaccatctactgcattcaatagtcctg |
125 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
32206942 |
agagcaggatcaagcttgtctttgtgatttgttgtgaatacaattatgtgttcttctccacagcatgaccaaagaccatctactgcattcaacagtcctg |
32206843 |
T |
|
| Q |
126 |
aaagtgtcacctgttga |
142 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
32206842 |
aaagtgtcacctgttga |
32206826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 20 - 139
Target Start/End: Original strand, 32157806 - 32157925
Alignment:
| Q |
20 |
cttaatagagcaggatcaagcctttctttgtgatttgttgtgaaaacaattatgtgttcttctccacagcacgaccaaagaccatctactgcattcaata |
119 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
32157806 |
cttaatagagcaggatcaagcctgtctttgtgatttgttgtgaaaacaattatgtgttcttctccacagcacgaccagagaccatctgtcgcattcaata |
32157905 |
T |
|
| Q |
120 |
gtcctgaaagtgtcacctgt |
139 |
Q |
| |
|
|||| |||||||||| |||| |
|
|
| T |
32157906 |
gtcccgaaagtgtcatctgt |
32157925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 359 - 428
Target Start/End: Original strand, 32174716 - 32174785
Alignment:
| Q |
359 |
ttttagtatgaatgaaactcaaagatgaatgatatatttgacgagaaatgcataccttattgtctccatt |
428 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||| || |||| |||||||||||| |||||| |
|
|
| T |
32174716 |
ttttagtatgaatgaaacccaaagattaatgatatatttgaagaaaaatatataccttattgtatccatt |
32174785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 359 - 428
Target Start/End: Original strand, 32182755 - 32182824
Alignment:
| Q |
359 |
ttttagtatgaatgaaactcaaagatgaatgatatatttgacgagaaatgcataccttattgtctccatt |
428 |
Q |
| |
|
||||||||||||||||||||||| || |||| ||||||||| || |||| ||||||||||||||||||| |
|
|
| T |
32182755 |
ttttagtatgaatgaaactcaaatattaatggtatatttgaagaaaaatatataccttattgtctccatt |
32182824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 330
Target Start/End: Original strand, 32174612 - 32174666
Alignment:
| Q |
276 |
aatttgttggctaaattatgactgtagttaaatatatctaaactagattcatgta |
330 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||| |||||| |||||| ||||||| |
|
|
| T |
32174612 |
aatttcttggctaaattatgactatagttaaatgtatctacactagaatcatgta |
32174666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 399
Target Start/End: Original strand, 32157036 - 32157076
Alignment:
| Q |
359 |
ttttagtatgaatgaaactcaaagatgaatgatatatttga |
399 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
32157036 |
ttttagtacgaatgaaactcaaagattaatgatatatttga |
32157076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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