View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_high_36 (Length: 442)
Name: NF20665_high_36
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_high_36 |
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Alignment Details
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 3965183 - 3964807
Alignment:
| Q |
1 |
tgaaaatgacgtacaaatcaaatcaaaactgatcttaatcttccctcagccatttcacatcaaatattgaggttcaatataaggacatgcgaatactaat |
100 |
Q |
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| T |
3965183 |
tgaaaatgacgtacaaatcaaatcaaaactgatcttaatcttccctcagccatttcacatcaaatattgaggttcaatataaggacatgcgaatactaat |
3965084 |
T |
|
| Q |
101 |
attaagatattcaaggnnnnnnnngaggtgaaattagggtttgtcaacctgctacattgctggcaaaacctttgttgaagctctgaaatgagtacggaat |
200 |
Q |
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| T |
3965083 |
attaagatattcaaggaaaaaaa-gaggtgaaattagggtttgtcaacctgctacattgctggcaaaacctttgttgaagctctgaaatgagtacggaat |
3964985 |
T |
|
| Q |
201 |
gagccttagaatggttttcacaaaccttatggcgcttatggtactgcttagcaacacttagatcagcattacagttatcaacttggcaagaaggtgtcac |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3964984 |
gagccttagaatggttttcacaaaccttatggcgcttatggtactgcttagcagcacttagatcagcattacagttatcaacttggcaagaaggtgtcac |
3964885 |
T |
|
| Q |
301 |
tgatcctccagcttttgaccctttcttgttgtaaagatgatcagtcaccacccttttctttttctcatcatctccata |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3964884 |
tgatcctccagcttttgaccctttcttgttgtaaagatgatcagtcaccacccttttccttttctcatcatctccata |
3964807 |
T |
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