View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_high_4 (Length: 691)
Name: NF20665_high_4
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 128; Significance: 8e-66; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 19 - 383
Target Start/End: Complemental strand, 33856214 - 33855852
Alignment:
| Q |
19 |
tcttatagtacaaacagactagattggtctgcatatgttcttgctacataaaa-----gtaacatctctcaatgcaaagaactaaacctatattttaata |
113 |
Q |
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|||||| |||||||||||| |||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
33856214 |
tcttatggtacaaacagacaagatcagtctgcatatgttcttgctacataacaagatagtaacatctctcaatgcaaagaactaaacctatattttaata |
33856115 |
T |
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| Q |
114 |
gaattacaaatactaaaaattacaactatactcatttcctccgtgatctcagattcaatttacatagcaggtggtacgggtactttcctcataaag-aag |
212 |
Q |
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| T |
33856114 |
gaattgcaaatattaaaaattactactatactcatttcttccgtgagctcagattcaatttatacaaca----------gtactttcctcctaaagaaaa |
33856025 |
T |
|
| Q |
213 |
acatgaaaaatgaaccctacgataaaaagttgcatatatccccaatttcatcacaccaataccataagataacacttcaaagaaaac----aaaccaaag |
308 |
Q |
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|||| ||||||||||||| ||||||| ||| |||||||| ||||||| ||||| | || |||||||||||||||||| ||| | ||||||||| |
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| T |
33856024 |
acattaaaaatgaaccct--gataaaatattgtatatatcctcaatttcctcacaaagaaactataagataacacttcaaataaagcaattaaaccaaag |
33855927 |
T |
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| Q |
309 |
agaaagtttctagaagtttcccaatccttgcttcttctttttcccccaataaggccaaaaagaccaacatgcgaa |
383 |
Q |
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| T |
33855926 |
ggaaagtttctacaagttttccaatccttgcttctttcttctccaccaataagataagaaagaccaacatgcgaa |
33855852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 399 - 445
Target Start/End: Complemental strand, 33855473 - 33855427
Alignment:
| Q |
399 |
agggttgccttaataaacacacaactattaacatataaatagcctgt |
445 |
Q |
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| T |
33855473 |
agggttgccttaataaatacacaactattaacatataaatagcctgt |
33855427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 111; Significance: 1e-55; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 44 - 383
Target Start/End: Complemental strand, 26099252 - 26098915
Alignment:
| Q |
44 |
ggtctgcatatgttcttgctacataaaa-----gtaacatctctcaatgcaaagaactaaacctatattttaatagaattacaaatactaaaaattacaa |
138 |
Q |
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|||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| | |
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| T |
26099252 |
ggtctgcatatgctcttgctacataacaagatagtaacatctctcaatgcaaagaactaaacctatattttaatagaattgaaaatattaaaaattacta |
26099153 |
T |
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| Q |
139 |
ctatactcatttcctccgtgatctcagattcaatttacatagcaggtggtacgggtactttcctcataaag-aagacatgaaaaatgaaccctacgataa |
237 |
Q |
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| T |
26099152 |
ctatactcatttcttccgtgagctcagattcaatttacataaca----------gtactttcctcctgaagaaaaacattaaaaatgaaccct--gataa |
26099065 |
T |
|
| Q |
238 |
aaagttgcatatatccccaatttcatcacaccaataccataagataacacttcaaagaaaac----aaaccaaagagaaagtttctagaagtttcccaat |
333 |
Q |
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|| ||| |||||||| ||||||| ||||| | || |||||||||||||||||| ||| | ||||||||| ||||||||||| |||||| | ||| |
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| T |
26099064 |
aatattgtatatatcctcaatttcctcacaaagaaactataagataacacttcaaataaagcaattaaaccaaagggaaagtttctacaagttttcaaat |
26098965 |
T |
|
| Q |
334 |
ccttgcttcttctttttcccccaataaggccaaaaagaccaacatgcgaa |
383 |
Q |
| |
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||||||||||| || ||| |||||||| | ||||||||||||||||| |
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| T |
26098964 |
ccttgcttctttcttctccaccaataagataagaaagaccaacatgcgaa |
26098915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 19 - 179
Target Start/End: Complemental strand, 25999485 - 25999320
Alignment:
| Q |
19 |
tcttatagtacaaacagactagattggtctgcatatgttcttgctacataaaa-----gtaacatctctcaatgcaaagaactaaacctatattttaata |
113 |
Q |
| |
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|||||| |||||||||||| |||| ||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
25999485 |
tcttatggtacaaacagacaagatcggtctgcatatattcttgctacataacaagatagtaacatctctcaatgcaaagaactaaacctatattttaata |
25999386 |
T |
|
| Q |
114 |
gaattacaaatactaaaaattacaactatactcatttcctccgtgatctcagattcaatttacata |
179 |
Q |
| |
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| T |
25999385 |
gaattgcaaatattaaaaattactactatactcatttcttccgtgagctcagattcaatttacata |
25999320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 399 - 445
Target Start/End: Complemental strand, 26098334 - 26098288
Alignment:
| Q |
399 |
agggttgccttaataaacacacaactattaacatataaatagcctgt |
445 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26098334 |
agggttgccttaataaatacacaactattaacatataaatagcctgt |
26098288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 399 - 445
Target Start/End: Complemental strand, 25998809 - 25998763
Alignment:
| Q |
399 |
agggttgccttaataaacacacaactattaacatataaatagcctgt |
445 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
25998809 |
agggttgccttaataaatacacaagtattaacatataaatagcctgt |
25998763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 26099306 - 26099256
Alignment:
| Q |
19 |
tcttatagtacaaacagactagattggtctgcatatgttcttgctacataa |
69 |
Q |
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|||||| |||||||||||| |||| ||||||||||||||||||||| |||| |
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| T |
26099306 |
tcttatggtacaaacagacaagatcggtctgcatatgttcttgctatataa |
26099256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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