View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_high_41 (Length: 426)
Name: NF20665_high_41
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_high_41 |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 34 - 410
Target Start/End: Original strand, 53739587 - 53739963
Alignment:
| Q |
34 |
tagtagataccagtaagtgaaaatcatatctcacatcttaaatatctgtgagacaatccctttgttggacctttgattaatatccctttgttggactatt |
133 |
Q |
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| T |
53739587 |
tagtacataccagtaagtgaaaatcatatctcacatcttaaatatctgtgagacaatccctttgttggacctttgattaatatccctttgttggactatt |
53739686 |
T |
|
| Q |
134 |
gttaatcaccaccattggtccatgatatcatgtccattttgattttgttttcttttcctggagttcataagctacacatgcatggtctgataatcaagca |
233 |
Q |
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| T |
53739687 |
gttaatcaccaccattggtccatgatatcatgttcattttgattttgttttcttttcctggagttcataagctacacatgcatggtctgataatcaagtt |
53739786 |
T |
|
| Q |
234 |
gttatgatatttacagaagagatagtgtcattggagcaaagttattttcttacgccactgtcgcatgataattatcatttatcaatcaatataatcgagg |
333 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
53739787 |
gttatgatatttacagaagagatagtgtcattggaccaaagttattttcttacgccaccttcacatgataattatcatttatcaatcaatataatcgagg |
53739886 |
T |
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| Q |
334 |
acagtaataaactctataaatatcaaaatgatggcgacaaatatcttgtctttcatgctttacctgaagctgaatct |
410 |
Q |
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||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53739887 |
acaataatgaactctataaatatcaaaatgatggcgacaaatatcttgtctttcatgctttacctgaagctgaatct |
53739963 |
T |
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