View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_high_44 (Length: 408)
Name: NF20665_high_44
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_high_44 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 28 - 342
Target Start/End: Original strand, 26496034 - 26496346
Alignment:
| Q |
28 |
taaggatgtacttgtaaagaaatatattaatacacaatgaaatttgaaaaggatcttttaaaaagggatgtagaaaaaattcaaaagtgtgggagttcta |
127 |
Q |
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| T |
26496034 |
taaggatgtacttgtaaagaaatatattaatacacaatgaaatttgaaaagggtcttttaaaaagggatgtagaaaaaattcaaaagtgtgggagttcta |
26496133 |
T |
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| Q |
128 |
gagaacaaaggtggtcaaaaagattcaatttcaatattttgaattttgttcttttgatgtatcaatttgtcttgaaaagctaaagtgagaatttactaac |
227 |
Q |
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| T |
26496134 |
gagaacaaaggtggtcaaaaagattcaatttcaatattttgaattttgttcttttgatgtatcaa-ttgtcttgaaaagctaaagtgagaatttattaac |
26496232 |
T |
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| Q |
228 |
aaagtaaaatttgactaaggtaaaattgttcgagtaatatgttcaataggaaaactatgttgaatattgtttgaggtaatatatcaaagagaaaaccaaa |
327 |
Q |
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| T |
26496233 |
aaagtaaaatttgactaaggtaaaattattcgagtaatatgttcaataggaaaactatattgaatattgtttga-gtaatatatcaaagagaaaatcaaa |
26496331 |
T |
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| Q |
328 |
accacatgagaagag |
342 |
Q |
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| T |
26496332 |
accacatgagaagag |
26496346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 26495803 - 26495746
Alignment:
| Q |
139 |
tggtcaaaaagattcaatttcaatattttgaattttgttcttttgatgtatcaatttg |
196 |
Q |
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| T |
26495803 |
tggtcaaaaagattcaatttcaatattttgaattttgttcatttgatgtatcgatttg |
26495746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 27341414 - 27341317
Alignment:
| Q |
15 |
tatgtaacataagtaaggatgtacttgtaaagaaatatattaatacacaatgaaatttgaaaaggatcttttaaaaagggatgtagaaaaaattcaaaa |
113 |
Q |
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| T |
27341414 |
tatgcaacataaataaggatatagtggtaaagaaata-attaatacacattgaaatttgaaatgaatcttataaaaagagacaaagaaaaaatacaaaa |
27341317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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