View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_high_45 (Length: 402)
Name: NF20665_high_45
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_high_45 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 20 - 394
Target Start/End: Complemental strand, 13773863 - 13773502
Alignment:
| Q |
20 |
tgtagataattgatgtatcatctgaaaaacaacagcagctgcaaagttgttgtcatgataagaggcagaaattacagtttgagataaaccacatgaactc |
119 |
Q |
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| T |
13773863 |
tgtagatatttgatgtattatctgaaaaacagcagcagctgcaaagttgttgtcatgataagaggcagaaa-----------gataaaccacatgaactc |
13773775 |
T |
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| Q |
120 |
catatgttttgcctactgagttatccgaaaaacacatgtttacaatcctcatcattattagtgcatagaacacaatgagttggacaattagctcctgtgt |
219 |
Q |
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| T |
13773774 |
catatgttttgcctactgagttatccgaaaaacacatgtttacaatcctcatcattattagtgcatagaacacaatgagttggacaattagctcctgtgt |
13773675 |
T |
|
| Q |
220 |
cattcaatcaaatacgagttggaaggtactgtctagacacccgccatataagatccttaaccttcggcggagcctttatcctccaaatcaaatttcatga |
319 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
13773674 |
cattcaatcaaatacgagttggatggtactgtctagacacccgccatataagatccttaaccttcggtggagcctttatcctccaaatcaaatttcatga |
13773575 |
T |
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| Q |
320 |
gccattcaccataaagtgagacgtatcaacaaattcttgaagagaaagacggaaagtagtttttacagaataatc |
394 |
Q |
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|||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
13773574 |
gccatt--ccctaaagtgagacgtatcaacaaattcttgaagagaaaggcggaaagtagtttttacagtataatc |
13773502 |
T |
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