View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_high_47 (Length: 396)
Name: NF20665_high_47
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_high_47 |
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Alignment Details
Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 199 - 379
Target Start/End: Complemental strand, 48415604 - 48415417
Alignment:
| Q |
199 |
ctcaacatatagttatatagaccgttctttataaaactaacaccatcatataaactcttctgagccacattatatgacatgtt-------ctgtacaatg |
291 |
Q |
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| T |
48415604 |
ctcaacatatagttatatagaccgttctttataaaactaacaccatcatataaactcttctgagccacattatatgacatgttctgataactgtacaatg |
48415505 |
T |
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| Q |
292 |
agcccggaataaatgtacaaatctggttagctcgtggttacaagtctcttcgacaacgtnnnnnnntatctatcttgacattgtatat |
379 |
Q |
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| T |
48415504 |
agcccagaataaatgtacaaatctggttagctcgtggttacaagtctcttcgacaacgtaaaaaaatatctatcttgacattgtatat |
48415417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 48415808 - 48415684
Alignment:
| Q |
1 |
ttttatcaatcacatgaggcacaccagcataaatttcaaccatcacaacaacaacaaacacattctttgggtgacattattgtaaatcgttacatcgaat |
100 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
48415808 |
ttttatcaatcacatgaggtacaccagcataaatttcaaccatcacaacaacaacaaacacattctttgggtgacattattgtaaatcgttacattgaat |
48415709 |
T |
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| Q |
101 |
gcgaaggatccaatgccagagtatc |
125 |
Q |
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| T |
48415708 |
gcgaaggatccaatgccagagtatc |
48415684 |
T |
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