View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_high_52 (Length: 382)
Name: NF20665_high_52
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_high_52 |
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Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 46557051 - 46557410
Alignment:
| Q |
1 |
tatcggtgtcgacagtcccctttacttctactttttgttgcttcaaatcaatagttgtttgataaacacctgatttaacaacaatattaacaagagtttt |
100 |
Q |
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| T |
46557051 |
tatcggtgtcgacagtcccctttacttctactttttgttgcttcaaatcaatagttgtttgataaacacctgatttaacaacaatattaacaagagtttt |
46557150 |
T |
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| Q |
101 |
gaaatgaaaacaaaaaataacatatattgagttttgaatgttattga-tttgttaccatctatgctttggaggacttttttgacttttctcatgcaacct |
199 |
Q |
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| T |
46557151 |
gaaatgaaaacaaaaaataacatatattgagttttgaatgttattgattttgttaccatctatgctttggaggacttttttgacttttctcatgcaacct |
46557250 |
T |
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| Q |
200 |
tgacaatgaatggagactcttaacgtacagctctgaaagaacaagaacaagaacagagacgtatgttagaagtagtaaaagagagttattaaaaccgcat |
299 |
Q |
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| T |
46557251 |
tgacaatgaatggagactcttaacgtacagctctgaaagaacaagaac--gaacagagacgtatgttagaagtagtaaaagagagttattaaaaccgcat |
46557348 |
T |
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| Q |
300 |
gcagaggaatgaatgaatgtttgatttaccttgcacatgagaggttgtaattgttgttcttc |
361 |
Q |
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| T |
46557349 |
gcagaggaatgaatgaatgtttgatttaccttgcacatgagaggttgtaattgttgttcttc |
46557410 |
T |
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