View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20665_high_58 (Length: 364)
Name: NF20665_high_58
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_high_58 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 25 - 348
Target Start/End: Complemental strand, 45162302 - 45161979
Alignment:
| Q |
25 |
aggagcacagaaacaaaagacaaaccaagaattgcactgtagttcatacattagagccttacgatatcttttgattgatcttattatgcaaacttccatg |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45162302 |
aggagcacagaaacaaaagacaaaccaagaattgcactgtagttcatacattagagccttacgatatcttttgattgatcttattatgcaaacttccatg |
45162203 |
T |
|
| Q |
125 |
cttaattggtttggaccacattgtacaacatgataacaacttgcatacagagcctatatgcctataatgaagatagatatgtacgatcttaagaaagtga |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
45162202 |
cttaattggtttggaccacattgtacaacatgataacaacttgcatacagagcgtatatgcctataatgaagatagatctgtacgatcttgagaaagtga |
45162103 |
T |
|
| Q |
225 |
tattaatacgatttacaaagttcaaacaaaattaatttggctttttattttcacaaaaacgcgtcctcttcattagagaacaaaagcagtacggttgtat |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
45162102 |
tattaatacgatttacaaagttcaaacaaaattaatttggctttttattttcacaaaaacgcgtcttcttcattagagaacaaaagcagtacggttgtat |
45162003 |
T |
|
| Q |
325 |
acgaattctgccatagaattcatg |
348 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
45162002 |
acgaattctgccatagaattcatg |
45161979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 16051859 - 16051896
Alignment:
| Q |
151 |
aacatgataacaacttgcatacagagcctatatgccta |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
16051859 |
aacatgataacaacttgcatacagagcctataagccta |
16051896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University