View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_high_6 (Length: 662)
Name: NF20665_high_6
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 274 - 653
Target Start/End: Complemental strand, 26800609 - 26800224
Alignment:
| Q |
274 |
taataatcactagtataaaatcattttcattggtattattattgatttgttaaatagaagaaactaagaaaga------gagagagtaaagttgaagata |
367 |
Q |
| |
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|||||||||||| |||| ||||||| | |||||||||| || |||||||||| |||||||||||||| ||| ||||||||||| ||||||||| |
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| T |
26800609 |
taataatcactaccgtaaattcatttttactggtattattgtttatttgttaaacagaagaaactaagagagaaactaagagagagtaaaattgaagata |
26800510 |
T |
|
| Q |
368 |
ccttgcgacgtaaggttgcgatggggtaaccagctgcatcaaccaagacacggcggtcacggagggttaagagagaacctttcactttgaacactatgtt |
467 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
26800509 |
ccttgcgacgcaaggttgcgatggggtaaccagcggcatcaaccaagacacggcggtcacggagggttaagagagaaccttttactttgaacacgatgtt |
26800410 |
T |
|
| Q |
468 |
gccgttgacatcagtaacggcgaagtttccatccgaaatggtcataaccttcttcacgaccgccaaatccaccggatatggagcacaatattgctgtccg |
567 |
Q |
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|
||||||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26800409 |
gccgttgacatcagtgacggcaaagtttccatctgaaatggtcataacctttttcacgacagccaaatccaccggatatggagcacaatattgctgtccg |
26800310 |
T |
|
| Q |
568 |
aatatggcagtggggtacgccggcatcggcggtgcagaagcatattgttgtggttgataaggataagccataatgacgatgatgat |
653 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26800309 |
aatatggcagtggggtgtgccggcatcggcggtgcagaagcatattgctgtggttgataaggataagccataatgacgatgatgat |
26800224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 346 - 575
Target Start/End: Complemental strand, 26795740 - 26795511
Alignment:
| Q |
346 |
agagagagtaaagttgaagataccttgcgacgtaaggttgcgatggggtaaccagctgcatcaaccaagacacggcggtcacggagggttaagagagaac |
445 |
Q |
| |
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||||||| |||||| ||| |||||| ||||| | ||| | |||||||| |||||| ||||||| |||||||||||| |||||||||||||||||||| | |
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|
| T |
26795740 |
agagagaataaagtggaacctaccttacgacggagggtggtgatggggttaccagcagcatcaagcaagacacggcgatcacggagggttaagagagagc |
26795641 |
T |
|
| Q |
446 |
ctttcactttgaacactatgttgccgttgacatcagtaacggcgaagtttccatccgaaatggtcataaccttcttcacgaccgccaaatccaccggata |
545 |
Q |
| |
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|||| |||||||| || || |||||||||||||||||||| ||||||||||| || ||||||||||| ||||| ||||| || || | |||||||||||| |
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| T |
26795640 |
ctttaactttgaagacaatattgccgttgacatcagtaacagcgaagtttccgtctgaaatggtcatcacctttttcaccacggcaagatccaccggata |
26795541 |
T |
|
| Q |
546 |
tggagcacaatattgctgtccgaatatggc |
575 |
Q |
| |
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|||||||||||||| | ||||||||||| |
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| T |
26795540 |
cggagcacaatattgaggaccgaatatggc |
26795511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 346 - 643
Target Start/End: Complemental strand, 26805633 - 26805336
Alignment:
| Q |
346 |
agagagagtaaagttgaagataccttgcgacgtaaggttgcgatggggtaaccagctgcatcaaccaagacacggcggtcacggagggttaagagagaac |
445 |
Q |
| |
|
||||||| ||| ||||||| |||||||||||||| ||| | ||| |||| | | || |||||||||||||||||||||||||||| |||||| |||||| |
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|
| T |
26805633 |
agagagattaacgttgaaggtaccttgcgacgtagggtggtgatagggttatctgcggcatcaaccaagacacggcggtcacggaaggttaaaagagaaa |
26805534 |
T |
|
| Q |
446 |
ctttcactttgaacactatgttgccgttgacatcagtaacggcgaagtttccatccgaaatggtcataaccttcttcacgaccgccaaatccaccggata |
545 |
Q |
| |
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|||| |||||||| || || |||||||||||||| || ||| |||||||||| || ||||| | || ||||| || || || |||||||||| ||||| |
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| T |
26805533 |
ctttaactttgaagacaatattgccgttgacatcggtgacgacgaagtttccgtctgaaattgctatcacctttttgaccacagccaaatccaatggata |
26805434 |
T |
|
| Q |
546 |
tggagcacaatattgctgtccgaatatggcagtggggtacgccggcatcggcggtgcagaagcatattgttgtggttgataaggataagccataatga |
643 |
Q |
| |
|
|||||||||||||| | || ||||||| || || | ||||||||||||||||||| ||| || ||||||||||||||||||||||||| |||| |
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| T |
26805433 |
cggagcacaatattgagggccaaatatggtggttggaagcaccggcatcggcggtgcagaggcagatggttgtggttgataaggataagccatgatga |
26805336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 77 - 188
Target Start/End: Complemental strand, 26800798 - 26800688
Alignment:
| Q |
77 |
actaatttataagtgtttttacatgtgaattcaagtaacatttgagctaacattttataatattttatgtcaaattttccattatttttaaaagtgatga |
176 |
Q |
| |
|
||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26800798 |
actaatttata-gtgtttttatatgcgaattcaagtaacatttgagctaacattttataattttttatgtcaaattttccattatttttaaaagtgatgg |
26800700 |
T |
|
| Q |
177 |
aaattgcaagaa |
188 |
Q |
| |
|
|||||||||||| |
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|
| T |
26800699 |
aaattgcaagaa |
26800688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 346 - 560
Target Start/End: Complemental strand, 26836330 - 26836119
Alignment:
| Q |
346 |
agagagagtaaagttgaagataccttgcgacgtaaggttgcgatggggtaaccagctgcatcaaccaagacacggcggtcacggagggttaagagagaac |
445 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||| ||| |||||||| ||| || |||||||||||||||||| ||||||| | ||| || | ||||| |
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|
| T |
26836330 |
agagagaataaagttgaacataccttgcgacgtagggtgatgatggggttaccggccgcatcaaccaagacacggtggtcacgtatggtaaacacagaac |
26836231 |
T |
|
| Q |
446 |
ctttcactttgaacactatgttgccgttgacatcagtaacggcgaagtttccatccgaaatggtcataaccttcttcacgaccgccaaatccaccggata |
545 |
Q |
| |
|
| || |||||||| |||||||||||||||||||||||||||| ||||| || | ||||||||| ||||| ||||| ||||| | ||||||||||| |
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|
| T |
26836230 |
ccttaactttgaaaactatgttgccgttgacatcagtaacggttaagtt---gtctgcaatggtcatcacctttttcaccaccgcgagttccaccggata |
26836134 |
T |
|
| Q |
546 |
tggagcacaatattg |
560 |
Q |
| |
|
||||| ||||||||| |
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|
| T |
26836133 |
tggagtacaatattg |
26836119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 365 - 560
Target Start/End: Complemental strand, 26789811 - 26789619
Alignment:
| Q |
365 |
ataccttgcgacgtaaggttgcgatggggtaaccagctgcatcaaccaagacacggcggtcacggagggttaagagagaacctttcactttgaacactat |
464 |
Q |
| |
|
||||||||||||||| ||| | |||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| | |
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|
| T |
26789811 |
ataccttgcgacgtagggtggtgatggggttaccggaggcatcaaccaagacacggcggtcacggagggttaagagagaacctttgactttaaacacgac |
26789712 |
T |
|
| Q |
465 |
gttgccgttgacatcagtaacggcgaagtttccatccgaaatggtcataaccttcttcacgaccgccaaatccaccggatatggagcacaatattg |
560 |
Q |
| |
|
|||||| |||||||| |||| | |||||| || | |||||||| ||||| ||||| ||||| ||||||||||| || |||||||||||||| |
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|
| T |
26789711 |
gttgccattgacatctttaacagtgaagtt---gtctgccatggtcattacctttttcacaaccgctaaatccaccggttaaggagcacaatattg |
26789619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 26801151 - 26801085
Alignment:
| Q |
1 |
agcttcccaccgatcatgcatagtcattatctgcaccaaaaacataattgaaatcattaaacaacac |
67 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
26801151 |
agcttcccaccgatcgtgcatagtcattatctgcaccaaaaacataatcgaaatcattaaacaacac |
26801085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 504 - 639
Target Start/End: Complemental strand, 26824300 - 26824165
Alignment:
| Q |
504 |
aatggtcataaccttcttcacgaccgccaaatccaccggatatggagcacaatattgctgtccgaatatggcagtggggtacgccggcatcggcggtgca |
603 |
Q |
| |
|
||||||||| ||||| ||||| || ||||||| ||||||||| ||| |||||||||| | | | ||||| || || | ||||||||||||||||| |
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|
| T |
26824300 |
aatggtcatcacctttttcactacggccaaattcaccggatacggatcacaatattgagggcatattatggtggttggaagcaccggcatcggcggtgca |
26824201 |
T |
|
| Q |
604 |
gaagcatattgttgtggttgataaggataagccata |
639 |
Q |
| |
|
|| ||| || ||||||||||| |||||||||||||| |
|
|
| T |
26824200 |
gaggcagatggttgtggttgacaaggataagccata |
26824165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 26807068 - 26807030
Alignment:
| Q |
1 |
agcttcccaccgatcatgcatagtcattatctgcaccaa |
39 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
26807068 |
agcttcccaccgatcatgcatagtcactatctgcaccaa |
26807030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 26796229 - 26796192
Alignment:
| Q |
1 |
agcttcccaccgatcatgcatagtcattatctgcacca |
38 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26796229 |
agcttcccaccgatcatgcatagtcactatctgcacca |
26796192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 26583197 - 26583231
Alignment:
| Q |
1 |
agcttcccaccgatcatgcatagtcattatctgca |
35 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |
|
|
| T |
26583197 |
agcttcccaccgatcatgcatagtcactatctgca |
26583231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 26837357 - 26837323
Alignment:
| Q |
2 |
gcttcccaccgatcatgcatagtcattatctgcac |
36 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26837357 |
gcttcccaccgatcatgcatagtcaatatctgcac |
26837323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 617 - 649
Target Start/End: Complemental strand, 26789583 - 26789551
Alignment:
| Q |
617 |
gtggttgataaggataagccataatgacgatga |
649 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
|
|
| T |
26789583 |
gtggttgataaggataagccatgatgacgatga |
26789551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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