View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_high_64 (Length: 348)
Name: NF20665_high_64
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_high_64 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 17 - 343
Target Start/End: Complemental strand, 11628900 - 11628574
Alignment:
| Q |
17 |
aatcataaccacattttttagccactctcctggcaagttcaagagatattttcccaattccatcagagaagacatatttggttttattatgtacatcaag |
116 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11628900 |
aatcataaccacatttttgagccactctcctggcaagttcaagagatattttgccaattccatcagagaagacatatttggttttattatgtacatcaag |
11628801 |
T |
|
| Q |
117 |
aataatttcaatttcggtgctgctgaccgttgtagtttcggtagaggaaccaaaagattgtccaagtctagcagcatatttagctacattttttatccgg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11628800 |
aataatttcaatttcggtgctgctgaccgttgtagtttcggtagaggaaccaaaagattgtccaagtctagcagcatatttagctacattttttatccgg |
11628701 |
T |
|
| Q |
217 |
ctaaaatctcccatccatttcctgatggaaccagcggtgtctccagttggtgtacgagcaaacatccatagcgaactttcacgcaactgacttgatgaaa |
316 |
Q |
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||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
11628700 |
ctaaaatctcccatccattcccttatggaaccagcggtatctccagttggtgtacgagcaaacatccatagcgaactttcacgcaattgacttgatgaaa |
11628601 |
T |
|
| Q |
317 |
aagctagaaattcaaacttcttatcac |
343 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
11628600 |
aagctagaaattcaaacttcttatcac |
11628574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 17 - 339
Target Start/End: Original strand, 11684877 - 11685208
Alignment:
| Q |
17 |
aatcataaccacattttttagccactctcctggcaagttcaagagatattttcccaattccatcagagaagacatatttggttttattatgt-------- |
108 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| | |||| |
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| T |
11684877 |
aatcatgaccacattttttagccactctcctggcaagttcaatagatattttcccgattccatcagagaagacatatttggttgcaccatgtttaacctt |
11684976 |
T |
|
| Q |
109 |
-acatcaagaataatttcaatttcggtgctgctgaccgttgtagtttcggtagaggaaccaaaagattgtccaagtctagcagcatatttagctacattt |
207 |
Q |
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|| ||| |||| ||||||||||| | |||||||| || |||||||||||| |||||||| || |||||||||||||||||||||||||| |||||| |
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| T |
11684977 |
cacgtcagaaatagtttcaatttcgttcctgctgacgcttagagtttcggtagacgaaccaaatgactgtccaagtctagcagcatatttagccacattt |
11685076 |
T |
|
| Q |
208 |
tttatccggctaaaatctcccatccatttcctgatggaaccagcggtgtctccagttggtgtacgagcaaacatccatagcgaactttcacgcaactgac |
307 |
Q |
| |
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||||| |||||||||||||||||||||| ||| |||||| | ||||| |||||||| |||| ||| ||||||||||||||| ||||||||||||||| |
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| T |
11685077 |
tttatacggctaaaatctcccatccattcccttatggaatcggcggtaagtccagttgttgtaggagaaaacatccatagcgagttttcacgcaactgac |
11685176 |
T |
|
| Q |
308 |
ttgatgaaaaagctagaaattcaaacttctta |
339 |
Q |
| |
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||||||| ||||| |||||||||||||||||| |
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| T |
11685177 |
ttgatgagaaagccagaaattcaaacttctta |
11685208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 17 - 339
Target Start/End: Original strand, 11688889 - 11689220
Alignment:
| Q |
17 |
aatcataaccacattttttagccactctcctggcaagttcaagagatattttcccaattccatcagagaagacatatttggttttattatgt-------- |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| | |||| |
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|
| T |
11688889 |
aatcatgaccacattttttagccactctcctggcaagttcaatagatattttcccgattccatcagagaagacatatttggttgcaccatgtttaacctt |
11688988 |
T |
|
| Q |
109 |
-acatcaagaataatttcaatttcggtgctgctgaccgttgtagtttcggtagaggaaccaaaagattgtccaagtctagcagcatatttagctacattt |
207 |
Q |
| |
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|| ||| |||| ||||||||||| | |||||||| || |||||||||||| |||||||| || |||||||||||||||||||||||||| |||||| |
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| T |
11688989 |
cacgtcagaaatagtttcaatttcgttcctgctgacgcttagagtttcggtagacgaaccaaatgactgtccaagtctagcagcatatttagccacattt |
11689088 |
T |
|
| Q |
208 |
tttatccggctaaaatctcccatccatttcctgatggaaccagcggtgtctccagttggtgtacgagcaaacatccatagcgaactttcacgcaactgac |
307 |
Q |
| |
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||||| |||||||||||||||||||||| ||| |||||| | ||||| |||||||| |||| ||| ||||||||||||||| ||||||||||||||| |
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| T |
11689089 |
tttatacggctaaaatctcccatccattcccttatggaatcggcggtaagtccagttgttgtaggagaaaacatccatagcgagttttcacgcaactgac |
11689188 |
T |
|
| Q |
308 |
ttgatgaaaaagctagaaattcaaacttctta |
339 |
Q |
| |
|
||||||| ||||| |||||||||||||||||| |
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| T |
11689189 |
ttgatgagaaagccagaaattcaaacttctta |
11689220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 17 - 336
Target Start/End: Complemental strand, 11637669 - 11637341
Alignment:
| Q |
17 |
aatcataaccacattttttagccactctcctggcaagttcaagagatattttcccaattccatcagagaagacatatttggttttattatgtaca----- |
111 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||| |||| | |||| | |
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| T |
11637669 |
aatcatgaccacattttttagccaccctcctggcaagttcaagagatatttttccgattccatcagagaagacatattcggttgcaccatgtttaacctt |
11637570 |
T |
|
| Q |
112 |
----tcaagaataatttcaatttcggtgctgctgaccgttgtagtttcggtagaggaaccaaaagattgtccaagtctagcagcatatttagctacattt |
207 |
Q |
| |
|
||| ||||||||||||||||| | || | ||| || |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
11637569 |
cgcgtcaggaataatttcaatttcgttccttcggacgcttagagtttcggtagacgaaccaaaagattgtccaagtctagcagcatatttagccacattt |
11637470 |
T |
|
| Q |
208 |
tttatccggctaaaatctcccatccatttcctgatggaaccagcggtgtctccagttggtgtacgagcaaacatccatagcgaactttcacgcaactgac |
307 |
Q |
| |
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||||| |||||||||||||||||||||| ||| |||||| | || || ||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
11637469 |
tttatacggctaaaatctcccatccattcccttatggaatcggcagtaagcccagttgttgtacgagcaaacatccatagcgagttttcacgcaactgac |
11637370 |
T |
|
| Q |
308 |
ttgatgaaaaagctagaaattcaaacttc |
336 |
Q |
| |
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||||||| ||||||||||||||||||||| |
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| T |
11637369 |
ttgatgagaaagctagaaattcaaacttc |
11637341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 11677140 - 11677193
Alignment:
| Q |
17 |
aatcataaccacattttttagccactctcctggcaagttcaagagatattttcc |
70 |
Q |
| |
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|||||||| ||||| |||||||||| ||||||||||||||||||||||||||| |
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|
| T |
11677140 |
aatcataatcacatgctttagccactgtcctggcaagttcaagagatattttcc |
11677193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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