View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_high_67 (Length: 346)
Name: NF20665_high_67
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_high_67 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 39293653 - 39293965
Alignment:
| Q |
1 |
ttgttgtgctgttagaaagagtcatag-gagacgtaaatatttagtggattactaataaaatttcatgttctgtttagattttttaattgaaggattata |
99 |
Q |
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| T |
39293653 |
ttgttgtgctgttagaaagagtcatagtgagacgtaaatatttagtggattactaataaaatttcatgttctgtttagattttttaattgaaggattata |
39293752 |
T |
|
| Q |
100 |
cgtactcatatctttattatatcgatctatttctcttttgact---gactgagtcatatatagctgcctaaacgtgttattttgattcctatttaaacgt |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39293753 |
cgtactcatatctttattatatcgatctatttctcttttgactcatgactgagtcatatatagctgcctaaacgtgttattttgattcctatttaaacgt |
39293852 |
T |
|
| Q |
197 |
aagagtttgtacattacttgttaatgaatccttcttaacatgttttgtctgtcgatgagtaagggaaacgataggcacaatggtttgatcattccaaaga |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39293853 |
tagagtttgtacattacttgttaatgaatccttcttaacatgttttgtctgtcgatgagtaagggaaacgataggcacaatggtttgatcattccaaaga |
39293952 |
T |
|
| Q |
297 |
caaagaatgccac |
309 |
Q |
| |
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||||||||||||| |
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| T |
39293953 |
caaagaatgccac |
39293965 |
T |
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