View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20665_high_68 (Length: 346)

Name: NF20665_high_68
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20665_high_68
NF20665_high_68
[»] chr1 (4 HSPs)
chr1 (19-346)||(32876395-32876722)
chr1 (20-127)||(33034633-33034741)
chr1 (19-95)||(15840932-15841008)
chr1 (19-95)||(36132752-36132828)
[»] chr6 (2 HSPs)
chr6 (20-133)||(34105399-34105510)
chr6 (44-127)||(34090373-34090455)
[»] scaffold0620 (1 HSPs)
scaffold0620 (21-127)||(3817-3922)
[»] chr7 (2 HSPs)
chr7 (31-127)||(6718766-6718862)
chr7 (19-86)||(23777664-23777731)
[»] chr3 (4 HSPs)
chr3 (20-127)||(19133732-19133839)
chr3 (19-82)||(24099360-24099423)
chr3 (25-84)||(24991946-24992005)
chr3 (19-80)||(24712623-24712684)
[»] chr2 (3 HSPs)
chr2 (144-219)||(15676745-15676820)
chr2 (49-86)||(7874306-7874343)
chr2 (19-83)||(4162052-4162115)
[»] chr8 (2 HSPs)
chr8 (45-86)||(17657031-17657072)
chr8 (19-55)||(17819864-17819900)
[»] chr5 (1 HSPs)
chr5 (62-114)||(28765603-28765655)
[»] chr4 (3 HSPs)
chr4 (28-84)||(26474830-26474886)
chr4 (19-86)||(36962644-36962711)
chr4 (23-86)||(39041303-39041366)


Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 19 - 346
Target Start/End: Complemental strand, 32876722 - 32876395
Alignment:
Q  19 ggggtgccttagtgatttgtttatggagtatggtgggtcgacgacttttgattcgagatcgggagtcactttattgacctaaatttttgggcttgtaagg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  32876722 ggggtgccttagtgatttgtttatggagtatggtgggtcgacgacttttgattcgagatcgggagtcactttcttgacctaaatttttgggcttgtaagg 32876623  T
Q  119 gtgtcttctttgacggatcagagaacgagcggtggtggaatctgaaagcgtgttggaataagtcattggtctggtatttaattgggcttagttgtggtga 218  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  32876622 gtgtcttctttggcggatcagagaacgagcggtggtggaatctgaaagcgtgttggaataagtcattggtctagtgtttaattgggcttagttgtggtga 32876523  T
Q  219 tgcgaagttaagcttctgttttcaagggttttattttattggaggggttatggtagcattcgataggtgattgaattttgtttctatagccactcatgag 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32876522 tgcgaagttaagcttctgttttcaagggttttattttattggaggggttatggtagcattcgataggtgattgaattttgtttctatagccactcatgag 32876423  T
Q  319 gaagtgtgggagtttgggtttgttttta 346  Q
    ||||||||||||||||||||||||||||    
T  32876422 gaagtgtgggagtttgggtttgttttta 32876395  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 33034741 - 33034633
Alignment:
Q  20 gggtgccttagtgatttgtttatggagtatggtgggtcgacgacttttgattcgagatcgggagtcacttt-attgacctaaatttttgggcttgtaagg 118  Q
    ||||||||||| |||||  ||||||||| |||||||||||  |||| |||||||||||||  ||||| |||  ||||| ||| |||||||| |||| | |    
T  33034741 gggtgccttagagattttcttatggagtctggtgggtcgatcacttctgattcgagatcgaaagtcagtttctttgacttaagtttttgggtttgttatg 33034642  T
Q  119 gtgtcttct 127  Q
    |||||||||    
T  33034641 gtgtcttct 33034633  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 15841008 - 15840932
Alignment:
Q  19 ggggtgccttagtgatttgtttatggagtatggtgggtcgacgacttttgattcgagatcgggagtcactttattga 95  Q
    ||||| |||||| ||||||||| | |||| |||||||  ||  ||||||||||||||||||||||||| ||| ||||    
T  15841008 ggggttccttagggatttgtttctagagtctggtgggctgatcacttttgattcgagatcgggagtcagtttcttga 15840932  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 36132828 - 36132752
Alignment:
Q  19 ggggtgccttagtgatttgtttatggagtatggtgggtcgacgacttttgattcgagatcgggagtcactttattga 95  Q
    |||||| |||||||| || ||| |||||| |||||||||||   ||||||||| |||||||| ||||| ||| ||||    
T  36132828 ggggtgtcttagtgaattatttttggagtttggtgggtcgatcgcttttgatttgagatcggaagtcagtttcttga 36132752  T

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Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 20 - 133
Target Start/End: Original strand, 34105399 - 34105510
Alignment:
Q  20 gggtgccttagtgatttgtttatggagtatggtgggtcgacgacttttgattcgagatcgggagtcactttattgacctaaatttttgggcttgtaaggg 119  Q
    ||||||||||||||||||||| | |||| ||||||| |||  ||||||||||||||||||||||||| ||| |||||  |||||||  ||||||| | ||    
T  34105399 gggtgccttagtgatttgtttctagagtttggtgggccgatcacttttgattcgagatcgggagtcagtttcttgactcaaatttt--ggcttgttatgg 34105496  T
Q  120 tgtcttctttgacg 133  Q
    ||| |||| |||||    
T  34105497 tgtgttctctgacg 34105510  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 34090373 - 34090455
Alignment:
Q  44 gagtatggtgggtcgacgacttttgattcgagatcgggagtcactttattgacctaaatttttgggcttgtaagggtgtcttct 127  Q
    |||| |||||||||||  | ||||||||||||||||||||||| ||| | |||  ||||||||||| |||| | ||||||||||    
T  34090373 gagtctggtgggtcgatcaattttgattcgagatcgggagtcagtttctagactcaaatttttggg-ttgttatggtgtcttct 34090455  T

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Target: scaffold0620 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 3817 - 3922
Alignment:
Q  21 ggtgccttagtgatttgtttatggagtatggtgggtcgacgacttttgattcgagatcgggagtcactttattgacctaaatttttgggcttgtaagggt 120  Q
    ||||||| |||||||||||| | |||| ||||||| |||  | ||||||||||||||||||||||| ||| |||||  ||||||||||| |||| | |||    
T  3817 ggtgcctcagtgatttgtttttagagtctggtgggccgatcaattttgattcgagatcgggagtcagtttcttgactcaaatttttggg-ttgttatggt 3915  T
Q  121 gtcttct 127  Q
    |||||||    
T  3916 gtcttct 3922  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 127
Target Start/End: Original strand, 6718766 - 6718862
Alignment:
Q  31 tgatttgtttatggagtatggtgggtcgacgacttttgattcgagatcgggagtcactttattgacctaaatttttgggcttgtaagggtgtcttct 127  Q
    |||||||||||||||||  ||||| ||||  | ||||||||||||||  ||||||| ||| |||||  |||| ||||||||||| | ||||||||||    
T  6718766 tgatttgtttatggagtccggtggatcgatcaattttgattcgagatgaggagtcagtttcttgactcaaatatttgggcttgttatggtgtcttct 6718862  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 23777731 - 23777664
Alignment:
Q  19 ggggtgccttagtgatttgtttatggagtatggtgggtcgacgacttttgattcgagatcgggagtca 86  Q
    ||||||||||||| ||||||||||| ||| |||| ||||||   |||||| ||||||||||| |||||    
T  23777731 ggggtgccttagttatttgtttatgaagtttggttggtcgatcgcttttgcttcgagatcggaagtca 23777664  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 19133839 - 19133732
Alignment:
Q  20 gggtgccttagtgatttgtttatggagtatggtgggtcgacgacttttgattcgagatcgggagtcactttattgacctaaatttttgggcttgtaaggg 119  Q
    ||||||||||||||||||||| |  | | |||||||| ||  |||||||||||||| | || ||||| ||||||| |  |||||||| ||||||| | ||    
T  19133839 gggtgccttagtgatttgtttctcaaatttggtgggtagatcacttttgattcgagtttggaagtcagtttattggctcaaattttttggcttgttacgg 19133740  T
Q  120 tgtcttct 127  Q
    ||||||||    
T  19133739 tgtcttct 19133732  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 24099423 - 24099360
Alignment:
Q  19 ggggtgccttagtgatttgtttatggagtatggtgggtcgacgacttttgattcgagatcggga 82  Q
    ||||||||||| |||||||||||| |||| ||||||| |||  ||||||||||||| |||||||    
T  24099423 ggggtgccttaatgatttgtttatagagtctggtgggccgatcacttttgattcgatatcggga 24099360  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 24992005 - 24991946
Alignment:
Q  25 ccttagtgatttgtttatggagtatggtgggtcgacgacttttgattcgagatcgggagt 84  Q
    |||||||||||||||| |||| ||||||||| ||||  ||||||||||||||| ||||||    
T  24992005 ccttagtgatttgtttttggattatggtgggccgaccgcttttgattcgagatagggagt 24991946  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 24712623 - 24712684
Alignment:
Q  19 ggggtgccttagtgatttgtttatggagtatggtgggtcgacgacttttgattcgagatcgg 80  Q
    ||||||||||| |||||||||| |||||||||||||| ||   | |||| ||||||||||||    
T  24712623 ggggtgccttactgatttgtttctggagtatggtgggccggtcattttttattcgagatcgg 24712684  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 219
Target Start/End: Complemental strand, 15676820 - 15676745
Alignment:
Q  144 cgagcggtggtggaatctgaaagcgtgttggaataagtcattggtctggtatttaattgggcttagttgtggtgat 219  Q
    |||| ||||||||||| ||||||  |||||||||||||||||| || | |||||||||||||| | || |||||||    
T  15676820 cgagtggtggtggaatatgaaagaatgttggaataagtcattgttcagatatttaattgggctcatttatggtgat 15676745  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 7874306 - 7874343
Alignment:
Q  49 tggtgggtcgacgacttttgattcgagatcgggagtca 86  Q
    |||||||||||  |||||||||||||||||||||||||    
T  7874306 tggtgggtcgatcacttttgattcgagatcgggagtca 7874343  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 4162115 - 4162052
Alignment:
Q  19 ggggtgccttagtgatttgtttatggagtatggtgggtcgacgacttttgattcgagatcgggag 83  Q
    ||||||||| |||||||||| |  ||||| ||||||| |||  ||||||||||||||||||||||    
T  4162115 ggggtgcct-agtgatttgtgttgggagtctggtgggccgatcacttttgattcgagatcgggag 4162052  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 17657072 - 17657031
Alignment:
Q  45 agtatggtgggtcgacgacttttgattcgagatcgggagtca 86  Q
    |||||||||||||||  |||||||||||||||||||||||||    
T  17657072 agtatggtgggtcgatcacttttgattcgagatcgggagtca 17657031  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 17819900 - 17819864
Alignment:
Q  19 ggggtgccttagtgatttgtttatggagtatggtggg 55  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  17819900 ggggtgccttactgatttgtttatggagtctggtggg 17819864  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 28765655 - 28765603
Alignment:
Q  62 acttttgattcgagatcgggagtcactttattgacctaaatttttgggcttgt 114  Q
    |||||||||||||||||| |||||| ||| ||||| ||| |||||||||||||    
T  28765655 acttttgattcgagatcgagagtcagtttcttgacttaagtttttgggcttgt 28765603  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 26474830 - 26474886
Alignment:
Q  28 tagtgatttgtttatggagtatggtgggtcgacgacttttgattcgagatcgggagt 84  Q
    ||||||||||||| |||||| ||||||| |||  |||||||||||||||||| ||||    
T  26474830 tagtgatttgtttttggagtttggtgggccgatcacttttgattcgagatcgagagt 26474886  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 36962711 - 36962644
Alignment:
Q  19 ggggtgccttagtgatttgtttatggagtatggtgggtcgacgacttttgattcgagatcgggagtca 86  Q
    ||||| ||||| ||||||| || |||||| ||||||| |||  ||||||||||||||||| |||||||    
T  36962711 ggggtaccttactgatttggttttggagtctggtgggccgattacttttgattcgagatcaggagtca 36962644  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 39041366 - 39041303
Alignment:
Q  23 tgccttagtgatttgtttatggagtatggtgggtcgacgacttttgattcgagatcgggagtca 86  Q
    ||||||| |||||||||||  |||| ||||||| |||  ||||||||||||||||| |||||||    
T  39041366 tgccttaatgatttgtttacagagtctggtgggccgatcacttttgattcgagatcaggagtca 39041303  T

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