View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_high_74 (Length: 332)
Name: NF20665_high_74
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_high_74 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 20 - 322
Target Start/End: Complemental strand, 42230084 - 42229781
Alignment:
| Q |
20 |
aggaacatagtcccgtgtcccaaactaggagactacaatattattaaaaa-caagaaacaaagtgtagttatatggataatgatgtttatttaaacacgt |
118 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42230084 |
aggaacatagtcccgtgtcccaaactaggaaactacaatattattaaaaaacaagaaacaaagtgtagttatatggataatgatatttatttaaacacga |
42229985 |
T |
|
| Q |
119 |
gtgccaccaacaggaccacccttgtgcattggatctccagtagctcctcctccaacaccatagtcagtgtcacgataacctggaccatatctgctattgt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42229984 |
gtgccaccaacaggaccacccttgtgcattggatctccagtagctcctcctccaacaccatagtcagtgtcacgataacctggaccatatctgctattgt |
42229885 |
T |
|
| Q |
219 |
acagtcctgcatgcgtcagcaataagcacaacaattgtgtgaatgttagtatgattataaatgcctcgaccatcttcagcctccatcctctatgtcctcc |
318 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42229884 |
acagtcctgcatgggtcagcaataagcacaacaattgtgtgaatgttagtatgattataaatgcctcgaccatcttcagcctccatcctctatgtcctcc |
42229785 |
T |
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| Q |
319 |
tatg |
322 |
Q |
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|||| |
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| T |
42229784 |
tatg |
42229781 |
T |
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