View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_high_8 (Length: 610)
Name: NF20665_high_8
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 10 - 522
Target Start/End: Original strand, 48229195 - 48229713
Alignment:
| Q |
10 |
ataattcttgaaacatacctaaaacaagatgattcttatgatcttgacggtgaaattatatttgaataattaaaagtcattagaga---tttaacagatg |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
48229195 |
ataattcttgaaacatacctaaaacaagatgattcttatgatcttgacggtgaaattatatttgaataattaaaagtcattagagaagttttaacagatg |
48229294 |
T |
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| Q |
107 |
aatcaaaataaagttatatgatattgaattctataaagacaattaagtattttcctaatgcatgcacgacgtgtagaataaatttttctaaattaaaatt |
206 |
Q |
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| T |
48229295 |
aatcaaaataaagttatatgatattgaattctataaaaacaattaagtattttcctaatgcatgcacgatgtgtagaataaatttttctaaattaaaatt |
48229394 |
T |
|
| Q |
207 |
gttataatattatgttttatttaacgtgtcacaaaatagattaaattgtcnnnnnnntagattaaataatcttctttgatttatctctgtatnnnnnnng |
306 |
Q |
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| T |
48229395 |
gttataatattatgttttatttaacgtgtcacaaaatagattaaattgtcaaaaaaatagattaaataatcttctttgatttatctctgtataaaaaaag |
48229494 |
T |
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| Q |
307 |
tcttccttttataccaaaacacaaagaatgcttcgaaattgcacaatagtatgagcaaggcaaacagaatcattaatgattttgct-nnnnnnntgtagg |
405 |
Q |
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| T |
48229495 |
tcttccttttataccaaaacacaaagaatgcctcgaaattgcacaatagtatcagcaaggcaaacagaatcattaatgattttgctaaaaaaaatgtagg |
48229594 |
T |
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| Q |
406 |
aaaaatgatcttcaattttattattttgcgcgctctcaaagttacaagacagccatgagtaggatatatcagagcatgattgttgc--nnnnnnnggact |
503 |
Q |
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| T |
48229595 |
aaaaatgatcttcaattttattattttgcgcgctctcaaagttacaagacagccatgagtaggatatatgaaagcatgattgttgctttttttttggact |
48229694 |
T |
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| Q |
504 |
ctatttgctctttatcttg |
522 |
Q |
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| T |
48229695 |
ctatttgctctttatcttg |
48229713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 165
Target Start/End: Original strand, 27953756 - 27953878
Alignment:
| Q |
45 |
ttatgatcttgacggtgaaattatatttgaataattaaaagtcattagaga---tttaacagatgaatcaaaataaagttatatgatattgaattctata |
141 |
Q |
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||||||||| || ||||||||| |||||||| |||| ||||||| | |||| |||| || |||||||||||||| |||| ||||||| ||||| || |
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| T |
27953756 |
ttatgatct-gatggtgaaattttatttgaagaattgaaagtcagtggagaagttttataagttgaatcaaaataaaattatgtgatattatattcttta |
27953854 |
T |
|
| Q |
142 |
aagacaattaagtattttcctaat |
165 |
Q |
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| |||| |||| | |||||||||| |
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| T |
27953855 |
atgacatttaaatgttttcctaat |
27953878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 31781783 - 31781864
Alignment:
| Q |
14 |
ttcttgaaacatacctaaaacaagatgattcttatgatcttgacggtgaaattatatttgaataattaaaagtcattagaga |
95 |
Q |
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| T |
31781783 |
ttcttgaaacatacttaaaacatgatgatttttatgatcttgatggtgaaattttatttgaagaattaaaattcattagaga |
31781864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 15857360 - 15857421
Alignment:
| Q |
29 |
taaaacaagatgattcttatgatcttgacggtgaaattatatttgaataattaaaagtcatt |
90 |
Q |
| |
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| T |
15857360 |
taaaacacaatgattcttataatcttgatggtaaaattctacttgaagaattaaaagtcatt |
15857421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 15 - 172
Target Start/End: Original strand, 37864681 - 37864841
Alignment:
| Q |
15 |
tcttgaaacatacctaaaacaagatgattcttatgatcttgacggtgaaattatatttgaataattaaaagtcattagag---atttaacagatgaatca |
111 |
Q |
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||||||||| || ||||||| | | |||| ||||||||| | ||||||||| ||||||| |||||||||||||||||| ||||||| ||||||| |
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| T |
37864681 |
tcttgaaacttatttaaaacatggtaattcatatgatcttcatggtgaaattcaatttgaagaattaaaagtcattagagtgattttaacaattgaatca |
37864780 |
T |
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| Q |
112 |
aaataaagttatatgatattgaattctataaagacaattaagtattttcctaatgcatgca |
172 |
Q |
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|||| ||||| |||||||||| |||| | ||| |||| | ||||||||||||||||| |
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| T |
37864781 |
aaatcaagtttgatgatattgagttctgttcgaacatttaattgttttcctaatgcatgca |
37864841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 48 - 171
Target Start/End: Original strand, 9435575 - 9435702
Alignment:
| Q |
48 |
tgatcttgacggtgaaattatatttgaataattaaaagtcattagaga---tttaacagatgaatc-aaaataaagttatatgatattgaattctataaa |
143 |
Q |
| |
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||||||||| ||||||||| ||||| || ||||||||||||||||||| |||||| | |||||| |||| || |||||||||||||| |||| ||| |
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| T |
9435575 |
tgatcttgatggtgaaattttatttaaagaattaaaagtcattagagaagttttaacggttgaatcaaaaagcaaattatatgatattgagttctttaat |
9435674 |
T |
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| Q |
144 |
gacaattaagtattttcctaatgcatgc |
171 |
Q |
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| |||| | |||||||||||||||| |
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| T |
9435675 |
tatgtttaattgttttcctaatgcatgc |
9435702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 45 - 136
Target Start/End: Complemental strand, 31603773 - 31603679
Alignment:
| Q |
45 |
ttatgatcttgacggtgaaattatatttgaataattaaaagtcattagaga---tttaacagatgaatcaaaataaagttatatgatattgaatt |
136 |
Q |
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| T |
31603773 |
ttatgatcttgatggtgaaatttcattctaagaattaaaagtcatcagagaggttttaacaaattaatcaaaagcaaattatatgatattgaatt |
31603679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 96 - 142
Target Start/End: Complemental strand, 34031822 - 34031776
Alignment:
| Q |
96 |
tttaacagatgaatcaaaataaagttatatgatattgaattctataa |
142 |
Q |
| |
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|||||||| | |||| |||||||| |||||||||||||||||||||| |
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| T |
34031822 |
tttaacagttcaatccaaataaagctatatgatattgaattctataa |
34031776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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