View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_high_81 (Length: 315)
Name: NF20665_high_81
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_high_81 |
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Alignment Details
Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 200 - 298
Target Start/End: Original strand, 33853599 - 33853697
Alignment:
| Q |
200 |
ttttgaaaaagcgcatccctataatttttaatacaatgtcattctttcactattataacacaaaaacgaattttaagagaccacatacatcaattactt |
298 |
Q |
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| T |
33853599 |
ttttgaaaaagcgcatccctataattgttaatgcaaagtcattctttcactattataacacaaaaacgcattttaagagaccacatacatcaattactt |
33853697 |
T |
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Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 33853414 - 33853509
Alignment:
| Q |
13 |
aatatcctttgttgcatcaaaatccttctgcaattaaatttatttagnnnnnnnnnnnncaatatataataataaagtttattactttagattttg |
108 |
Q |
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| T |
33853414 |
aatatcctttgttgcatcaaaatccttctgcaattaaatttatttagaaaaaagaaatacaataaataataatgaagtttattactttagattttg |
33853509 |
T |
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