View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20665_high_84 (Length: 312)

Name: NF20665_high_84
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20665_high_84
NF20665_high_84
[»] chr5 (1 HSPs)
chr5 (16-309)||(42903218-42903502)


Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 309
Target Start/End: Original strand, 42903218 - 42903502
Alignment:
Q  16 ataaagtccaaatctgacctggcacagctctaccagataaaactgctagtgccacatatatatcttcaggatcttttggttgaaaatcaaaaactagaac 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42903218 ataaagtccaaatctgacctggcacagctctaccagataaaactgctagtgccacatatatatcttcaggatcttttggttgaaaatcaaaaactagaac 42903317  T
Q  116 ctgaaaataaatactagcaataaaatataatataagacgttctctacgtctcgaggcctgctccggcctgaatagccttcggactcaactcggctaaacn 215  Q
    |||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  42903318 ctgaaaataaatactagcaataa-----aatataagacgttctctacgtctcgaggcctgctccggcctgaatagccttcggactcaactcggctaaact 42903412  T
Q  216 nnnnnncttaataaaaattaacaccaataaaatgtaagagaggaaggaataggattggaacctgtgaaggtgaggaaggtttgatgatgtccat 309  Q
          |||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  42903413 ttttttcttaataaa----aacaccaataaaatgtaagagaggaaggaataggattggaacctgtgaaggtgaggaaggtttgatgatgaccat 42903502  T

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