View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_high_85 (Length: 309)
Name: NF20665_high_85
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_high_85 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 65 - 295
Target Start/End: Complemental strand, 1004717 - 1004480
Alignment:
| Q |
65 |
ggtaaggagtcccttttggtccaataattacatccctcaacagattcatctttcatttatatgctcggacaaatatggaatctgacaaagataaaagagt |
164 |
Q |
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| T |
1004717 |
ggtaaggagtcccttttggtccaataattacagccctcaacagattcatctttgatttatatgctcggacaaatatggaatctgacaaagataaaagagt |
1004618 |
T |
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| Q |
165 |
agaaaa-------gagattgagcaaaattccataataacaatactgaattgaacacaaagcaaacccacccggcaaatccttctccaaaatttcccagtc |
257 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1004617 |
agaaaaacatgacgagattgagcaaaattccataataacaatactgaattgaacacaaagcaaacccacccggcaaatccttctccaaaatttcccagtc |
1004518 |
T |
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| Q |
258 |
ttcctggattgcatccgaccaattatttggatgctgtt |
295 |
Q |
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| T |
1004517 |
ttcctggattgcatccgaccaattatttggatgctgtt |
1004480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 1004788 - 1004745
Alignment:
| Q |
4 |
tcaacgacataccgggggtacaatgggatagttactaggaaagt |
47 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1004788 |
tcaacgacataccgggggtacaatgggatagttactagggaagt |
1004745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 248
Target Start/End: Complemental strand, 52472840 - 52472800
Alignment:
| Q |
208 |
gaacacaaagcaaacccacccggcaaatccttctccaaaat |
248 |
Q |
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||||||||| | ||| ||||||||||||||||||||||||| |
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| T |
52472840 |
gaacacaaaaccaactcacccggcaaatccttctccaaaat |
52472800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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