View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_high_87 (Length: 307)
Name: NF20665_high_87
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_high_87 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 11 - 307
Target Start/End: Complemental strand, 42744927 - 42744629
Alignment:
| Q |
11 |
cacagagcgaataaaaatagcttataaagccagtcctaatatctgagaggcggaaactaattctgctataagcataccggaatacacaactaattccttc |
110 |
Q |
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| T |
42744927 |
cacagagcgaataaaaatagcttataaagccagtcctaatatctgagaggcggaaactaattctgctataagcataccggaatacacaactaattccttc |
42744828 |
T |
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| Q |
111 |
aaccaactaataaataattttttcgtgacaataaagtctctagccgtatcaataactatgcatatgtatgca------nnnnnnnnnnnnacaaaatcaa |
204 |
Q |
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| T |
42744827 |
aaccaacta----ataattttttcgtgacaataaagtctctagccgtatcaataactatgcatatgtatgcatgtgtgtgtgtgtttttgacaaaatcaa |
42744732 |
T |
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| Q |
205 |
attgggtgtaatgtaccgttttcaaaagagggagagaatctgcatctggtatgccattggggcaatgttgagcaacctctgtcctaatacgaacttgcca |
304 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42744731 |
attgggtgtaccgtaccgttttcaaaagagggagagaatctgcatctggtatgccattggggcaatgttgagcaacctctgtcctaatacgatcttgcca |
42744632 |
T |
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