View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20665_high_88 (Length: 302)
Name: NF20665_high_88
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_high_88 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 171; Significance: 7e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 14 - 297
Target Start/End: Original strand, 20368556 - 20368840
Alignment:
| Q |
14 |
aggtgaacactttaagatggaaaatcacagacgctaggaccgagctcgtgtgcactcccaaacattg-gaaaggataatgagaacaatagaaaccttgtg |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
20368556 |
aggtgaacactttaagatggaaaatcacagacgctaggaccgagctcgtgtgcactctcaaacattgagaaaggataatgagaacaataaaaaccttgtg |
20368655 |
T |
|
| Q |
113 |
aaggtttatgagnnnnnnnggagataaaaggnnnnnnn-gtttcttcataaaccttttcacaatgtttgtattgttttcatcatcctttcctaatatttc |
211 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
20368656 |
aaggtttatgagaaaaaa-ggagataaaaggttttttttgtttcttcataaaccttttcacaaggtttgtattgttttcatcatcctttcctaatgtttg |
20368754 |
T |
|
| Q |
212 |
ggaccggacacaagctcaatctttgcatctataattttccatcttaaagggtttaataaactgtattgccgcctcaaagcctcatt |
297 |
Q |
| |
|
|||| ||||||||||||| |||||| ||||||| |||||||||||||||||||||| |||| |||| ||| ||||||||||||||| |
|
|
| T |
20368755 |
ggactggacacaagctcagtctttgtatctatagttttccatcttaaagggtttaacaaaccgtatggcctcctcaaagcctcatt |
20368840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 20368771 - 20368711
Alignment:
| Q |
55 |
gagctcgtgtgcactcccaaacatt-ggaaaggataatgagaacaatagaaaccttgtgaa |
114 |
Q |
| |
|
||||| |||| || ||||||||||| ||||||||| |||| ||||||| |||||||||||| |
|
|
| T |
20368771 |
gagcttgtgtccagtcccaaacattaggaaaggatgatgaaaacaatacaaaccttgtgaa |
20368711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 46951370 - 46951260
Alignment:
| Q |
15 |
ggtgaacactttaagatggaaaatcacagacgctaggaccgagctcgtgtgcactcccaaacatt-ggaaaggataatgagaacaatagaaaccttgtga |
113 |
Q |
| |
|
|||||||||||||||| |||||||||| | ||| ||||| | | ||| ||||| |||||||||| |||||||| |||||||| || ||||||||||| |
|
|
| T |
46951370 |
ggtgaacactttaagaaggaaaatcacggccgcaaggactgggttcgcgtgcaggcccaaacattaggaaaggacaatgagaataacccaaaccttgtga |
46951271 |
T |
|
| Q |
114 |
aggtttatgag |
124 |
Q |
| |
|
|| || ||||| |
|
|
| T |
46951270 |
agtttgatgag |
46951260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University