View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_high_93 (Length: 295)
Name: NF20665_high_93
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_high_93 |
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Alignment Details
Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 11 - 277
Target Start/End: Original strand, 22366493 - 22366762
Alignment:
| Q |
11 |
cagagatattgagggacaacaagtttggcatactttggagtaatttcattgcatcattctgttgct---tcataagtttcacctccagcttaacaaggtt |
107 |
Q |
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| T |
22366493 |
cagagatatggagggacaacaagtttggcatactttggagtaatttcattgcatcgttcccttcctccttcgtaagtctcaccttcatgtcaacaaggtt |
22366592 |
T |
|
| Q |
108 |
tgtgagttttgaaatccactcaggcaatttctctaaatttccgaagagtataaaatgttgaatcttaggtgggggtgaattcaaatccagatcaatgaat |
207 |
Q |
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| T |
22366593 |
tgtgagttttggaatccactcaggaaacttctttaaattcccgtagagtccaatatgttgaagcataggtgggggtgaattcaaatccagatcaatgaat |
22366692 |
T |
|
| Q |
208 |
gtgttcaatgcgattcctctaatatgcagtttctctagttgttgcatttgattgattgagaaagatatag |
277 |
Q |
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| T |
22366693 |
gtctcatattcgactccactaatatttagtttctccagttgttgcatcttattgattgaagaagatatag |
22366762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 13 - 212
Target Start/End: Original strand, 22441316 - 22441515
Alignment:
| Q |
13 |
gagatattgagggacaacaagtttggcatactttggagtaatttcattgcatcattctgttgcttcataagtttcacctccagcttaacaaggtttgtga |
112 |
Q |
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| T |
22441316 |
gagatatggagggacaacaagtttggcatacttatgagtaatttcattgcatcattttgttgcttcgtaagtgtcactctaagcttaacaaggtttctga |
22441415 |
T |
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| Q |
113 |
gttttgaaatccactcaggcaatttctctaaatttccgaagagtataaaatgttgaatcttaggtgggggtgaattcaaatccagatcaatgaatgtgtt |
212 |
Q |
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| T |
22441416 |
gtttttgaatccactcaggaaacttatataaattcccgtcgaatttaacatgttgaagcttaggtgggggtgaattcaaatccagatcaatgaatgtgtt |
22441515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 11 - 277
Target Start/End: Original strand, 22435203 - 22435469
Alignment:
| Q |
11 |
cagagatattgagggacaacaagtttggcatactttggagtaatttcattgcatcattctgttgcttcataagtttcacctccagcttaacaaggtttgt |
110 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||| | || || |||||||||||||| ||| |
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| T |
22435203 |
cagagatatggagggacaacaagtttggcatactttgaagtaatttcattgcatcattcacttccttcaaacgtggcaaatccagcttaacaagattttg |
22435302 |
T |
|
| Q |
111 |
gagttttgaaatccactcaggcaatttctctaaatttccgaagagtataaaatgttgaatcttaggtgggggtgaattcaaatccagatcaatgaatgtg |
210 |
Q |
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| T |
22435303 |
gagttttgaaatccactcaggaaacttatttgaatatccaaagagtttaacacgttcaagcctaggtgggggtgaattcaaatccagatcaatgaaaatg |
22435402 |
T |
|
| Q |
211 |
ttcaatgcgattcctctaatatgcagtttctctagttgttgcatttgattgattgagaaagatatag |
277 |
Q |
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| ||| |||||| |||||||||| ||||||||| ||||| | |||||||||| ||||||||| |
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| T |
22435403 |
tctaatttgattccaaaaatatgcagtctctctagttcatgcatcttattgattgaggaagatatag |
22435469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 22 - 277
Target Start/End: Original strand, 22634041 - 22634296
Alignment:
| Q |
22 |
agggacaacaagtttggcatactttggagtaatttcattgcatcattctgttgcttcataagtttcacctccagcttaacaaggtttgtgagttttgaaa |
121 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||| || |||| ||| |||||| || |||||| || | | ||||||||||| |
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| T |
22634041 |
agggacaacaagtttggcatacttttgagtaatttcattgcatcattcccttccttcgtaatcgtcaccttcaacttaacgagatattggagttttgaaa |
22634140 |
T |
|
| Q |
122 |
tccactcaggcaatttctctaaatttccgaagagtataaaatgttgaatcttaggtgggggtgaattcaaatccagatcaatgaatgtgttcaatgcgat |
221 |
Q |
| |
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||||||||||||||||| ||||| || | ||| ||| | |||||| ||| |||||||||||||||||||||| ||||||||||||||| || ||| |
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| T |
22634141 |
tccactcaggcaatttcaataaataccctataagtttaacacgttgaagctttggtgggggtgaattcaaatccatatcaatgaatgtgttatatctgat |
22634240 |
T |
|
| Q |
222 |
tcctctaatatgcagtttctctagttgttgcatttgattgattgagaaagatatag |
277 |
Q |
| |
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||||||||||| |||||||| | ||||||||| | ||||||||| ||||||||| |
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| T |
22634241 |
tcctctaatatttagtttctccaattgttgcatcttgttgattgaggaagatatag |
22634296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 21 - 277
Target Start/End: Original strand, 22629025 - 22629281
Alignment:
| Q |
21 |
gagggacaacaagtttggcatactttggagtaatttcattgcatcattctgttgcttcataagtttcacctccagcttaacaaggtttgtgagttttgaa |
120 |
Q |
| |
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|||||||| ||| ||| |||||||||||||||||||||||||||||||| ||||||| |||| |||| |||||||||||| || |||||||||| |
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| T |
22629025 |
gagggacagcaattttcgcatactttggagtaatttcattgcatcattcccttgcttcgtaagcatcactctcagcttaacaagattctggagttttgaa |
22629124 |
T |
|
| Q |
121 |
atccactcaggcaatttctctaaatttccgaagagtataaaatgttgaatcttaggtgggggtgaattcaaatccagatcaatgaatgtgttcaatgcga |
220 |
Q |
| |
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||||||||||| ||||||| |||| ||| ||||| ||| | |||||| | ||||||||||||| ||| ||||||||||||||||||||| || || |
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| T |
22629125 |
atccactcaggtaatttcttaaaatatccatagagtttaacacgttgaagcctaggtgggggtgacttctaatccagatcaatgaatgtgtcatattgga |
22629224 |
T |
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| Q |
221 |
ttcctctaatatgcagtttctctagttgttgcatttgattgattgagaaagatatag |
277 |
Q |
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||| ||||| || |||||||| | ||||||||| | |||||||||| ||||||||| |
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| T |
22629225 |
ctccactaatttgtagtttctccaattgttgcatcttattgattgaggaagatatag |
22629281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 27 - 277
Target Start/End: Original strand, 22466545 - 22466786
Alignment:
| Q |
27 |
caacaagtttggcatactttggagtaatttcattgcatcattctgttgcttcataagtttcacctccagcttaacaaggtttgtgagttttgaaatccac |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || |||| ||| | |||||| |||| |||||| ||| ||||||||||||||||| |
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| T |
22466545 |
caacaagtttggcatactttggagtaatttcattgcatcattcccttccttcctaactgtcaccttgagctcaacaagatttttgagttttgaaatccac |
22466644 |
T |
|
| Q |
127 |
tcaggcaa-tttctctaaatttccgaagagtataaaatgttgaatcttaggtgggggtgaattcaaatccagatcaatgaatgtgttcaatgcgattcct |
225 |
Q |
| |
|
||||| || ||||| ||||| | | ||| ||| | |||||| | |||||||||||||||||||||||||| ||||| |||| ||||||| |
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| T |
22466645 |
tcaggtaactttct-taaatgccagtcaagtttaacacgttgaagcctaggtgggggtgaattcaaatccagaccaatg---------aatgagattcct |
22466734 |
T |
|
| Q |
226 |
ctaatatgcagtttctctagttgttgcatttgattgattgagaaagatatag |
277 |
Q |
| |
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| ||| | |||||||| | |||||||||||||||||||||| ||||||||| |
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| T |
22466735 |
ccgataagtagtttctccatttgttgcatttgattgattgaggaagatatag |
22466786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 20 - 134
Target Start/End: Original strand, 22352418 - 22352532
Alignment:
| Q |
20 |
tgagggacaacaagtttggcatactttggagtaatttcattgcatcattctgttgcttcataagtttcacctccagcttaacaaggtttgtgagttttga |
119 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||| ||| ||||| | |||||||||||| || ||||||||| |
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| T |
22352418 |
tgagggacaacaaatttggcatactttggagtaatttcattgcatcattctctggcttcggaagattcactttcagcttaacaagattctggagttttga |
22352517 |
T |
|
| Q |
120 |
aatccactcaggcaa |
134 |
Q |
| |
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||||||||||||||| |
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| T |
22352518 |
aatccactcaggcaa |
22352532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 208
Target Start/End: Original strand, 22356557 - 22356747
Alignment:
| Q |
21 |
gagggacaacaagtttggcatactttggagtaatttcattgcatcattctgttgcttcataagtttcacctccagcttaacaaggtttgtgagttttgaa |
120 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| || | || |||| | || | |||||| ||||| ||| |||||||||| |
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| T |
22356557 |
gagggacaacaaatttggcatactttggagtaatttcattgcatcattcacttccctcgtaaggcttacattcagcttgacaagattttggagttttgaa |
22356656 |
T |
|
| Q |
121 |
atccactcaggcaatttctctaaatt----tccgaagagtataaaatgttgaatcttaggtgggggtgaattcaaatccagatcaatgaatg |
208 |
Q |
| |
|
|||||||||||||| || | ||| || || | ||| ||| | |||||| | |||||||||||||||||||||| ||||||||||||| |
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| T |
22356657 |
atccactcaggcaacttatttaatttaaggtcttga-agtttaacacgttgaagcataggtgggggtgaattcaaatcaagatcaatgaatg |
22356747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 22352542 - 22352582
Alignment:
| Q |
171 |
cttaggtgggggtgaattcaaatccagatcaatgaatgtgt |
211 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
22352542 |
cttaggtgggggtgaattcaaatccagatcaatgaatgtgt |
22352582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 22457092 - 22457131
Alignment:
| Q |
21 |
gagggacaacaagtttggcatactttggagtaatttcatt |
60 |
Q |
| |
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||||| |||||||||||||||||||| ||||||||||||| |
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| T |
22457092 |
gagggtcaacaagtttggcatacttttgagtaatttcatt |
22457131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 22480073 - 22480112
Alignment:
| Q |
21 |
gagggacaacaagtttggcatactttggagtaatttcatt |
60 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||| |
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|
| T |
22480073 |
gagggtcaacaagtttggcatacttttgagtaatttcatt |
22480112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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