View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_high_94 (Length: 295)
Name: NF20665_high_94
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_high_94 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 7858286 - 7858006
Alignment:
| Q |
1 |
cctctatgtataccaaactttcaggtaagtagctatagaacaattgattatgtcctttctataccgttcttctaagcatgtgtttgcctgagcgtttcgt |
100 |
Q |
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||||||||||||||||| |||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7858286 |
cctctatgtataccaaattttcagataagtagctataaaacaa--gattatgtcctttctataccgttcttctaagcatgtgtttgcctgagcgtttcgt |
7858189 |
T |
|
| Q |
101 |
catctcagacgtgtgttgtggttgctttttaccgtggaatcaaaaggctacaaattgtaactttagaaaaaatgcacattcaccttttgaattattcttc |
200 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7858188 |
catctcagacg-gtgttgtggttgctttttaccgtggaatcaaaaggctacaaatagtaactttagaaaaaatgcacattcaccttttgaattattcttc |
7858090 |
T |
|
| Q |
201 |
aatgttgtccactccacgagttacatgggattttgtttgtataagtaatgaaattctaatctttttatggtgattttgtttttg |
284 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7858089 |
aatgttgtccactccacgagttacatgggattttgtgtgtataagtaatgaaattctaatctttttatggtgattttgtttttg |
7858006 |
T |
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