View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_10 (Length: 600)
Name: NF20665_low_10
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 1 - 585
Target Start/End: Complemental strand, 35015579 - 35014990
Alignment:
| Q |
1 |
cttttgaaacattcgaaggagatagagatagaaggagggattgtggtatggtagtagaaggaaggtgggactcgtgatggagcaataacttggggatgga |
100 |
Q |
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| T |
35015579 |
cttttgaaacattcgaaggagatagagatagaaggagggattgtggtatggtagtagaaggaaggtgggactcgtgatggagcaataacttggggatgga |
35015480 |
T |
|
| Q |
101 |
gggtccaaaagctggtgccagcttagcaagctttaaaagttggaagcttttgtttgggcattggttatactttaatggattttggggttttgtttttcga |
200 |
Q |
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| T |
35015479 |
gggtccaaaagctggtgccagcttagcaagctttaaaagttggaagcttttgtttgggcattggttatactttaatggattttggggttttgtttttcga |
35015380 |
T |
|
| Q |
201 |
ccttgtacactactatatgctatatccagtatgagtaatgattgtatttttgtgacaatggtatttctaagaaaatttaaagcatgctttgatgtattag |
300 |
Q |
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| T |
35015379 |
ccttgtacactactatatgctatatccagtatgagtaatgattgtatttttgtgacaatggtattactaagaaaatttaaagcatgctttgatatattag |
35015280 |
T |
|
| Q |
301 |
aggtggacccatctttgtatgattttggaaaataaattcttttgaaaattggtgaatggatgccaacttgaaatggtatggatgtggaataaagccaaga |
400 |
Q |
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| T |
35015279 |
aggtggacccatctttgtatga-tttggaaaataaattcttttgaaaattggtgaatggatgccaacttgatgtggtatggatgtagaataaagccaaga |
35015181 |
T |
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| Q |
401 |
tggtattttactggtacttcataggaccaccaatcatgaattatggatcctataagatgatgccgtgtggcacagttcaaaatttgaataattgattgtg |
500 |
Q |
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| T |
35015180 |
tggtattttactggtacttcataggaccaccaatcatgaattatggatcctataagatgatgccgtgtggcacagttcaaaatttgaataattgattgtg |
35015081 |
T |
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| Q |
501 |
gaaaactcatgtagta------gtatatcacattggcttgctatagataaagccagaaataaaatttatgaatagagtttaagttgattgt |
585 |
Q |
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| T |
35015080 |
gaaaactcatgtagtataatttgtatatcacattggcttgctatagataaggccagaaataaaatttatgaatagagtttaagttgattgt |
35014990 |
T |
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