View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_103 (Length: 278)
Name: NF20665_low_103
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_103 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 262
Target Start/End: Original strand, 31525430 - 31525680
Alignment:
| Q |
20 |
ataggaacatgtcaattaatccaaatcagacaactatgtggttgtactatacttttttacaaaattatcaa-gtgatttcttggagtataattattgtgg |
118 |
Q |
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| T |
31525430 |
ataggaacatgtcaattcatccaaatcagacaactatgtggttgtactatacttttttacaaaattatcaaagtgatttcttggagtataattattgggg |
31525529 |
T |
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| Q |
119 |
atgttttggtgaggcaaatgggataaaggatgaagaaatacaaatgggataactattaagagaa-------gcgtgctctgagccacatgttgcacagtt |
211 |
Q |
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| T |
31525530 |
atgttttggtgaggcgaatgggataaaggatgaagaaatacaaatgagataactattaagagaagcgtgatgcgtgctctgagccacaggttgcacagtt |
31525629 |
T |
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| Q |
212 |
agaaggaaaattgaaggagtcagctattgtccaagacgcgacactcgaaag |
262 |
Q |
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| T |
31525630 |
agatggaaaattgaaggagtcagctattgtccaagacgcgacactcgaaag |
31525680 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 102
Target Start/End: Original strand, 47236669 - 47236715
Alignment:
| Q |
56 |
tgtggttgtactatacttttttacaaaattatcaagtgatttcttgg |
102 |
Q |
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| T |
47236669 |
tgtggttgtgctatacatttttacaagattatcaagtgaattcttgg |
47236715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 27602852 - 27602893
Alignment:
| Q |
40 |
ccaaatcagacaactatgtggttgtactatacttttttacaa |
81 |
Q |
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| T |
27602852 |
ccaaatcagacaactttgtggtcgtactatactttcttacaa |
27602893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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