View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_111 (Length: 271)
Name: NF20665_low_111
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_111 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 23237724 - 23237977
Alignment:
| Q |
1 |
taaattaagctttgatcgatctatctctagttgccagcactgctgctatgcctgatttcaagctctctcaactatttggtatccctattactcccaagaa |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
23237724 |
taaattaagctttgatcgatatatctctagttgccagcactgctgctatgtctgatttcaagctctctcaactatttggtatccctattactccaaagaa |
23237823 |
T |
|
| Q |
101 |
agctaaagttcctcctattgtctgttggcttcctcccaaaccgggctgcatcaagataaactgtgatggctcctcctttggtagtactagtggatcaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23237824 |
agctaaagttcctcctattgtctgttggcttcctcccaaaccgggctgcatcaagataaactgtgatggctcctcctttggtagtactagtggatcaata |
23237923 |
T |
|
| Q |
201 |
ggttttattctcagaaactctaatactgatttcatgggcgccttatgccagaat |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
23237924 |
ggttttattctcagaaactctaatactgatttcatgggcgccgtatgccagaat |
23237977 |
T |
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