View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20665_low_113 (Length: 266)

Name: NF20665_low_113
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20665_low_113
NF20665_low_113
[»] chr7 (1 HSPs)
chr7 (4-266)||(1375242-1375504)
[»] chr3 (6 HSPs)
chr3 (4-133)||(15242859-15242988)
chr3 (4-133)||(15203838-15203967)
chr3 (14-138)||(17782035-17782158)
chr3 (14-138)||(19090662-19090785)
chr3 (20-70)||(36639739-36639790)
chr3 (14-67)||(11578791-11578844)
[»] chr6 (8 HSPs)
chr6 (20-139)||(22607792-22607911)
chr6 (21-133)||(3754441-3754552)
chr6 (4-131)||(10345426-10345553)
chr6 (21-109)||(6109419-6109507)
chr6 (4-83)||(7099216-7099295)
chr6 (46-133)||(31344214-31344301)
chr6 (12-114)||(14480094-14480195)
chr6 (20-109)||(7412455-7412544)
[»] chr2 (5 HSPs)
chr2 (13-131)||(23150797-23150915)
chr2 (13-131)||(23562054-23562172)
chr2 (13-101)||(5356615-5356704)
chr2 (20-125)||(25880932-25881037)
chr2 (20-139)||(10886760-10886880)
[»] chr5 (5 HSPs)
chr5 (55-131)||(31393138-31393214)
chr5 (141-221)||(15135112-15135199)
chr5 (20-67)||(23167001-23167048)
chr5 (4-139)||(28421459-28421593)
chr5 (4-133)||(31022352-31022482)
[»] chr4 (3 HSPs)
chr4 (13-129)||(14331932-14332048)
chr4 (21-114)||(13033591-13033684)
chr4 (11-101)||(34845454-34845544)
[»] chr8 (6 HSPs)
chr8 (13-53)||(1565440-1565480)
chr8 (62-139)||(31178408-31178485)
chr8 (62-139)||(31178920-31178997)
chr8 (62-139)||(31179432-31179509)
chr8 (20-139)||(37296504-37296622)
chr8 (4-45)||(1038971-1039012)
[»] chr1 (1 HSPs)
chr1 (14-133)||(14746682-14746801)
[»] scaffold0233 (1 HSPs)
scaffold0233 (15-114)||(15993-16093)


Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 4 - 266
Target Start/End: Complemental strand, 1375504 - 1375242
Alignment:
Q  4 ggagcagcagagaccggttcaaacgaactgtaacgtctctttcccacgtttccgtgaatctctccccgacgattaaacttcctataatttcgtaaccgcc 103  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  1375504 ggagcaacagagaccggttcaaacgaactgtaacgtctctttcccatgtttccgcgaatctctccccgacgattacacttcctataatttcgtaaccgcc 1375405  T
Q  104 ggacacgcgtgggtcttacaacggctctgccaacactcacattgtacttggatcaatatccaatgctagcgctgctgttaaaggatgtaatgtaatacaa 203  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1375404 ggacacgcgtgggtcttacaacggctctgctaacactcacattgtacttggatcaatatccaatgctagcgctgctgttaaaggatgtaatgtaatacaa 1375305  T
Q  204 ccaataatgattagttatatcttaatgatatcttattttaaatatatttaaatttacatttat 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1375304 ccaataatgattagttatatcttaatgatatcttattttaaatatatttaaatttacatttat 1375242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 15242859 - 15242988
Alignment:
Q  4 ggagcagcagagaccggttcaaacgaactgtaacgtctctttcccacgtttccgtgaatctctccccgacgattaaacttcctataatttcgtaaccgcc 103  Q
    |||||| | |||||| |||||||||||| ||||| ||||||||||||||| ||  |||| |||| |||||| ||| |||||   ||||||||||||||||    
T  15242859 ggagcaactgagacctgttcaaacgaacagtaacatctctttcccacgttcccacgaatatctcaccgacggttacacttctactaatttcgtaaccgcc 15242958  T
Q  104 ggacacgcgtgggtcttacaacggctctgc 133  Q
    |||||| |||| | |||| |||||||||||    
T  15242959 ggacacacgtgtgccttaaaacggctctgc 15242988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 15203838 - 15203967
Alignment:
Q  4 ggagcagcagagaccggttcaaacgaactgtaacgtctctttcccacgtttccgtgaatctctccccgacgattaaacttcctataatttcgtaaccgcc 103  Q
    |||||| | ||||||  ||||||||||| ||||| ||||||||||||||| ||  |||| |||| |||||| ||| |||||   | ||||||||||| ||    
T  15203838 ggagcaactgagacctattcaaacgaacagtaacatctctttcccacgttcccacgaatatctcaccgacggttacacttctactgatttcgtaaccacc 15203937  T
Q  104 ggacacgcgtgggtcttacaacggctctgc 133  Q
    |||||| |||| | |||| |||||||||||    
T  15203938 ggacacacgtgtgccttaaaacggctctgc 15203967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 138
Target Start/End: Original strand, 17782035 - 17782158
Alignment:
Q  14 agaccggttcaaacgaactgtaacgtctctttcccacgtttccgtgaatctctccccgacgattaaacttcctataatttcgtaaccgccggacacgcgt 113  Q
    ||||| ||||||||||| |||||||||||||||||||| | ||| |||||||||||   |  ||| ||||   || ||||||||||| |||||||| |||    
T  17782035 agaccagttcaaacgaattgtaacgtctctttcccacg-tcccgcgaatctctccctagctgttacacttgtcatgatttcgtaaccaccggacacacgt 17782133  T
Q  114 gggtcttacaacggctctgccaaca 138  Q
    | | | ||||| |||||||| ||||    
T  17782134 gtgccatacaatggctctgcaaaca 17782158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 138
Target Start/End: Original strand, 19090662 - 19090785
Alignment:
Q  14 agaccggttcaaacgaactgtaacgtctctttcccacgtttccgtgaatctctccccgacgattaaacttcctataatttcgtaaccgccggacacgcgt 113  Q
    ||||| ||||||||||| |||||||||||||||||||| | ||| |||||||||||   |  ||| ||||   || ||||||||||| |||||||| |||    
T  19090662 agaccagttcaaacgaattgtaacgtctctttcccacg-tcccgcgaatctctccctagctgttacacttgtcatgatttcgtaaccaccggacacacgt 19090760  T
Q  114 gggtcttacaacggctctgccaaca 138  Q
    | | | ||||| |||||||| ||||    
T  19090761 gtgccatacaatggctctgcaaaca 19090785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 36639790 - 36639739
Alignment:
Q  20 gttcaaacgaactgtaacgtctc-tttcccacgtttccgtgaatctctcccc 70  Q
    |||||||||||| |||||||||| ||||||||||||||| |||| |||||||    
T  36639790 gttcaaacgaaccgtaacgtctcttttcccacgtttccgcgaatatctcccc 36639739  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 11578791 - 11578844
Alignment:
Q  14 agaccggttcaaacgaactgtaacgtctctttcccacgtttccgtgaatctctc 67  Q
    ||||| |||||||||||||| || || ||||||||||||| ||| |||||||||    
T  11578791 agaccagttcaaacgaactgcaatgtttctttcccacgttcccgcgaatctctc 11578844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 139
Target Start/End: Complemental strand, 22607911 - 22607792
Alignment:
Q  20 gttcaaacgaactgtaacgtctctttcccacgtttccgtgaatctctccccgacgattaaacttcctataatttcgtaaccgccggacacgcgtgggtct 119  Q
    |||||||||||||||||||||||||||| ||||| ||| ||||||||||||| |||||| |||||| |  |||| ||||||| ||  |||   || | ||    
T  22607911 gttcaaacgaactgtaacgtctctttccaacgttcccgcgaatctctccccggcgattacacttcccacgattttgtaaccgtcgagcacatttgtgcct 22607812  T
Q  120 tacaacggctctgccaacac 139  Q
    |||||||||||||| |||||    
T  22607811 tacaacggctctgcaaacac 22607792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 133
Target Start/End: Complemental strand, 3754552 - 3754441
Alignment:
Q  21 ttcaaacgaactgtaacgtctctttcccacgtttccgtgaatctctccccgacgattaaacttcctataatttcgtaaccgccggacacgcgtgggtctt 120  Q
    |||||||||||||||| ||||||  || ||||| ||| |||||||||| || || ||| |||||||| || ||||||||||| |  ||| |||| |||||    
T  3754552 ttcaaacgaactgtaatgtctctg-cctacgttcccgcgaatctctcctcggcggttacacttcctacaaattcgtaaccgcagagcacacgtgtgtctt 3754454  T
Q  121 acaacggctctgc 133  Q
    |||| ||||||||    
T  3754453 acaatggctctgc 3754441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 131
Target Start/End: Complemental strand, 10345553 - 10345426
Alignment:
Q  4 ggagcagcagagaccggttcaaacgaactgtaacgtctctttcccacgtttccgtgaatctctccccgacgattaaacttcctataatttcgtaaccgcc 103  Q
    |||||| || ||||| ||||||||||| ||||| |||||||||||| ||| ||   |||||||||||| || |||||||| | | |||||| ||| || |    
T  10345553 ggagcaacaaagaccagttcaaacgaattgtaatgtctctttcccatgttccccccaatctctccccggcggttaaactttccacaatttcctaatcgtc 10345454  T
Q  104 ggacacgcgtgggtcttacaacggctct 131  Q
     | ||| |||| | ||||||||||||||    
T  10345453 aggcacacgtgtgacttacaacggctct 10345426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 6109419 - 6109507
Alignment:
Q  21 ttcaaacgaactgtaacgtctctttcccacgtttccgtgaatctctccccgacgattaaacttcctataatttcgtaaccgccggacac 109  Q
    ||||||||||||||||| ||||||| |||||||  || ||||||||| |||||  ||| |||| | |  |||||||||||||| |||||    
T  6109419 ttcaaacgaactgtaacatctcttttccacgttctcgcgaatctctcgccgacagttacactttccacgatttcgtaaccgccagacac 6109507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 7099216 - 7099295
Alignment:
Q  4 ggagcagcagagaccggttcaaacgaactgtaacgtctctttcccacgtttccgtgaatctctccccgacgattaaactt 83  Q
    |||||| | |||||| ||||||||||||  ||||||||||||||||||||  || |||| |||| |||||| ||| ||||    
T  7099216 ggagcaactgagacctgttcaaacgaacaataacgtctctttcccacgttctcgcgaatatctcaccgacggttacactt 7099295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 133
Target Start/End: Original strand, 31344214 - 31344301
Alignment:
Q  46 cccacgtttccgtgaatctctccccgacgattaaacttcctataatttcgtaaccgccggacacgcgtgggtcttacaacggctctgc 133  Q
    |||||||| |||||||| |||| ||| || ||| ||||| ||  |||||||||||| ||| ||| |||| | ||||||||||||||||    
T  31344214 cccacgttcccgtgaatatctcaccggcggttacacttcttacgatttcgtaaccgtcggtcacacgtgtgccttacaacggctctgc 31344301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 14480195 - 14480094
Alignment:
Q  12 agagaccggttcaaacgaactgtaacgtctctttcccacgtttccgtgaatctctccccgacgattaaacttcctataatttcgtaaccgccggacacgc 111  Q
    ||||||| |||||||||||||| |||| ||| |||||||||| |||||| | |||| |||||| ||| | || | |  |||||||||| ||||||||| |    
T  14480195 agagaccagttcaaacgaactgcaacgcctc-ttcccacgttcccgtgagtttctctccgacggttacattttccacgatttcgtaactgccggacacac 14480097  T
Q  112 gtg 114  Q
    |||    
T  14480096 gtg 14480094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 7412544 - 7412455
Alignment:
Q  20 gttcaaacgaactgtaacgtctctttcccacgtttccgtgaatctctccccgacgattaaacttcctataatttcgtaaccgccggacac 109  Q
    |||||||||||  ||||||||| ||||||| ||| ||| |||| |||| ||| || ||| ||||| ||  |||||||||||| |||||||    
T  7412544 gttcaaacgaatagtaacgtctatttcccaagttcccgcgaatatctcaccggcggttacacttcttacgatttcgtaaccggcggacac 7412455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 131
Target Start/End: Complemental strand, 23150915 - 23150797
Alignment:
Q  13 gagaccggttcaaacgaactgtaacgtctctttcccacgtttccgtgaatctctccccgacgattaaacttcctataatttcgtaaccgccggacacgcg 112  Q
    |||||| |||||||| || |||||||||||||||||||||| ||||||||||||| | |  | ||  |||||| |  |||||||||||| ||||||| ||    
T  23150915 gagacccgttcaaactaaatgtaacgtctctttcccacgttcccgtgaatctctcactggaggtttcacttcccacgatttcgtaaccgtcggacacacg 23150816  T
Q  113 tgggtcttacaacggctct 131  Q
    || | | ||||||||||||    
T  23150815 tgtgccatacaacggctct 23150797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 131
Target Start/End: Complemental strand, 23562172 - 23562054
Alignment:
Q  13 gagaccggttcaaacgaactgtaacgtctctttcccacgtttccgtgaatctctccccgacgattaaacttcctataatttcgtaaccgccggacacgcg 112  Q
    |||||| |||||||| || |||||||||||||||||||||| ||||||||||||| | |  | ||  |||||| |  |||||||||||| ||||||| ||    
T  23562172 gagacccgttcaaactaaatgtaacgtctctttcccacgttcccgtgaatctctcactggaggtttcacttcccacgatttcgtaaccgtcggacacacg 23562073  T
Q  113 tgggtcttacaacggctct 131  Q
    || | | ||||||||||||    
T  23562072 tgtgccatacaacggctct 23562054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 5356704 - 5356615
Alignment:
Q  13 gagaccggttcaaacgaactgtaacgtctcttt-cccacgtttccgtgaatctctccccgacgattaaacttcctataatttcgtaaccg 101  Q
    |||||| |||||||||||||| ||||||||||| |||| | | ||| |||||||||||||||| ||| ||| || |  ||||||||||||    
T  5356704 gagaccagttcaaacgaactgcaacgtctctttacccatgatcccgcgaatctctccccgacggttacactacccacgatttcgtaaccg 5356615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 25880932 - 25881037
Alignment:
Q  20 gttcaaacgaactgtaacgtctctttcccacgtttccgtgaatctctccccgacgattaaacttcctataatttcgtaaccgccggacacgcgtgggtct 119  Q
    |||||||||||| ||||||||||||||||||||| ||| |||| |||| | | || ||| |||||   | |||| || |||||||||||| |||| | ||    
T  25880932 gttcaaacgaacagtaacgtctctttcccacgttcccgcgaatatctcactggcggttacacttctactgattttgtgaccgccggacacacgtgtgcct 25881031  T
Q  120 tacaac 125  Q
    ||||||    
T  25881032 tacaac 25881037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 139
Target Start/End: Original strand, 10886760 - 10886880
Alignment:
Q  20 gttcaaacgaactgtaacgtctctttccc-acgtttccgtgaatctctccccgacgattaaacttcctataatttcgtaaccgccggacacgcgtgggtc 118  Q
    |||||||||||||||||  |||||||||| |||||  || |||||||||||||||  ||| |||||| |  ||||||||| || ||| ||| | || | |    
T  10886760 gttcaaacgaactgtaaaatctctttccccacgttctcgcgaatctctccccgactgttacacttcccacgatttcgtaatcgtcgggcacacatgtgcc 10886859  T
Q  119 ttacaacggctctgccaacac 139  Q
    || |||||||||||| |||||    
T  10886860 tttcaacggctctgcaaacac 10886880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 131
Target Start/End: Complemental strand, 31393214 - 31393138
Alignment:
Q  55 ccgtgaatctctccccgacgattaaacttcctataatttcgtaaccgccggacacgcgtgggtcttacaacggctct 131  Q
    |||||||||| ||||||||| ||| |||||| || ||||||||||||| || |||||||| | ||||||||||||||    
T  31393214 ccgtgaatctttccccgacggttacacttcccatgatttcgtaaccgcagggcacgcgtgtgccttacaacggctct 31393138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 15135199 - 15135112
Alignment:
Q  141 cacattgtacttggatcaatatccaatgctagc-------gctgctgttaaaggatgtaatgtaatacaaccaataatgattagttat 221  Q
    ||||||||||||||||||| |||||||||||||       ||||||||| ||||||||||||||| ||| |||||||| |||| ||||    
T  15135199 cacattgtacttggatcaacatccaatgctagcttctgctgctgctgtttaaggatgtaatgtaaaacagccaataattattaattat 15135112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 23167048 - 23167001
Alignment:
Q  20 gttcaaacgaactgtaacgtctctttcccacgtttccgtgaatctctc 67  Q
    |||||||||||||||||||||||||||||||||| ||| |||| ||||    
T  23167048 gttcaaacgaactgtaacgtctctttcccacgttcccgcgaatatctc 23167001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 139
Target Start/End: Original strand, 28421459 - 28421593
Alignment:
Q  4 ggagcagcagagaccggttcaaacgaactgtaacgtctctttcccacgtttccgtgaatctctccccgacgattaaacttcctataatttcgtaaccgcc 103  Q
    |||||| | |||||| ||||||||||||||||||||||| | |||||||| ||   ||||||||| ||  | ||| |||||||| || ||||||||||||    
T  28421459 ggagcaactgagaccagttcaaacgaactgtaacgtctc-tgcccacgttcccacaaatctctcctcggtggttacacttcctacaaattcgtaaccgcc 28421557  T
Q  104 ggacacgcgtgggtcttacaacggctctgccaacac 139  Q
    |  ||| |||| | |||||| ||||| ||| |||||    
T  28421558 gagcacacgtgtgccttacagcggctatgcaaacac 28421593  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 31022352 - 31022482
Alignment:
Q  4 ggagcagcagagaccggttcaaacgaactgtaacgtctcttt-cccacgtttccgtgaatctctccccgacgattaaacttcctataatttcgtaaccgc 102  Q
    |||||| | |||||| |||||||||||| ||||||| ||||| |||||||| |||  ||| | || |||||| ||| |||||   | |||||||||||||    
T  31022352 ggagcaactgagacctgttcaaacgaacagtaacgtgtctttacccacgttcccgcaaatatatcaccgacggttatacttctagtgatttcgtaaccgc 31022451  T
Q  103 cggacacgcgtgggtcttacaacggctctgc 133  Q
    | | ||| |||| | ||||||||| ||||||    
T  31022452 cagccacacgtgtgccttacaacgactctgc 31022482  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 14331932 - 14332048
Alignment:
Q  13 gagaccggttcaaacgaactgtaacgtctctttcccacgtttccgtgaatctctccccgacgattaaacttcctataatttcgtaaccgccggacacgcg 112  Q
    |||||| |||| ||||||||||||||||||||||||| ||||| ||| ||||||| ||  || ||| || ||| |  |||||||||||||||||||  ||    
T  14331932 gagaccagttcgaacgaactgtaacgtctctttcccatgtttctgtgtatctctcaccagcggttatacatcccacgatttcgtaaccgccggacatacg 14332031  T
Q  113 tgggtcttacaacggct 129  Q
    || ||| ||||| ||||    
T  14332032 tgtgtcgtacaaaggct 14332048  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 13033591 - 13033684
Alignment:
Q  21 ttcaaacgaactgtaacgtctctttcccacgtttccgtgaatctctccccgacgattaaacttcctataatttcgtaaccgccggacacgcgtg 114  Q
    ||||||||||| ||||||||| |||| |||||| ||| |||| |||| | |||| ||| ||||||    |||||||||||||||||||| ||||    
T  13033591 ttcaaacgaacagtaacgtctatttctcacgttcccgcgaatatctcactgacggttacacttcccccgatttcgtaaccgccggacacacgtg 13033684  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 101
Target Start/End: Original strand, 34845454 - 34845544
Alignment:
Q  11 cagagaccggttcaaacgaactgtaacgtctctttcccacgtttccgtgaatctctccccgacgattaaacttcctataatttcgtaaccg 101  Q
    |||||||| ||||||| ||||| ||||||||||||||||| || |||  ||| |||| ||| || ||| |||||| |  ||||||||||||    
T  34845454 cagagaccagttcaaatgaactttaacgtctctttcccacattcccgcaaatatctcaccggcggttacacttcccacgatttcgtaaccg 34845544  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 1565440 - 1565480
Alignment:
Q  13 gagaccggttcaaacgaactgtaacgtctctttcccacgtt 53  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  1565440 gagaccagttcaaacgaactgtaacgtctctttcccacgtt 1565480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 139
Target Start/End: Complemental strand, 31178485 - 31178408
Alignment:
Q  62 tctctccccgacgattaaacttcctataatttcgtaaccgccggacacgcgtgggtcttacaacggctctgccaacac 139  Q
    ||||||||||||| ||| |||||| || |||| ||||||| ||| ||| |||| | |||||||||||||||| |||||    
T  31178485 tctctccccgacgtttacacttcccatgattttgtaaccgtcgggcacacgtgtgccttacaacggctctgcaaacac 31178408  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 139
Target Start/End: Complemental strand, 31178997 - 31178920
Alignment:
Q  62 tctctccccgacgattaaacttcctataatttcgtaaccgccggacacgcgtgggtcttacaacggctctgccaacac 139  Q
    ||||||||||||| ||| |||||| || |||| ||||||| ||| ||| |||| | |||||||||||||||| |||||    
T  31178997 tctctccccgacgtttacacttcccatgattttgtaaccgtcgggcacacgtgtgccttacaacggctctgcaaacac 31178920  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 139
Target Start/End: Complemental strand, 31179509 - 31179432
Alignment:
Q  62 tctctccccgacgattaaacttcctataatttcgtaaccgccggacacgcgtgggtcttacaacggctctgccaacac 139  Q
    ||||||||||||| ||| |||||| || |||| ||||||| ||| ||| |||| | |||||||||||||||| |||||    
T  31179509 tctctccccgacgtttacacttcccatgattttgtaaccgtcgggcacacgtgtgccttacaacggctctgcaaacac 31179432  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 139
Target Start/End: Original strand, 37296504 - 37296622
Alignment:
Q  20 gttcaaacgaactgtaacgtctctttcccacgtttccgtgaatctctccccgacgattaaacttcctataatttcgtaaccgccggacacgcgtgggtct 119  Q
    ||||||||||| ||||||||||||  ||||| || ||  |||||||||| ||||| ||| ||||||||  | ||| |||||||||  ||| | || | ||    
T  37296504 gttcaaacgaattgtaacgtctctg-cccacattccctcgaatctctcctcgacggttacacttcctacgaattcataaccgccgagcacacatgtgcct 37296602  T
Q  120 tacaacggctctgccaacac 139  Q
    |||||||||||||| |||||    
T  37296603 tacaacggctctgcaaacac 37296622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 1038971 - 1039012
Alignment:
Q  4 ggagcagcagagaccggttcaaacgaactgtaacgtctcttt 45  Q
    |||||| |||||||  ||||||||||||||||||||||||||    
T  1038971 ggagcaacagagactagttcaaacgaactgtaacgtctcttt 1039012  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 133
Target Start/End: Original strand, 14746682 - 14746801
Alignment:
Q  14 agaccggttcaaacgaactgtaacgtctctttcccacgtttccgtgaatctctccccgacgattaaacttcctataatttcgtaaccgccggacacgcgt 113  Q
    ||||| |||||||||||||||||||||||||| ||||||| || ||||| |||  |||  | ||| |||| || | |||| ||||||| ||||||| |||    
T  14746682 agaccagttcaaacgaactgtaacgtctcttt-ccacgttcccatgaatatcttaccggtggttacactttctctgattttgtaaccgtcggacacacgt 14746780  T
Q  114 gggtc-ttacaacggctctgc 133  Q
    | ||| |||||||||||||||    
T  14746781 gtgtcattacaacggctctgc 14746801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 114
Target Start/End: Original strand, 15993 - 16093
Alignment:
Q  15 gaccggttcaaacgaactgtaacgtctcttt-cccacgtttccgtgaatctctccccgacgattaaacttcctataatttcgtaaccgccggacacgcgt 113  Q
    |||| |||||||||||||||||||| |||||  ||||||| ||  |||| |||| ||| || ||| |||||| |  ||||||||||||||| |||| |||    
T  15993 gaccagttcaaacgaactgtaacgtatctttatccacgttcccacgaatatctcaccggcggttacacttcccacgatttcgtaaccgccgaacacacgt 16092  T
Q  114 g 114  Q
    |    
T  16093 g 16093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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