View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_115 (Length: 265)
Name: NF20665_low_115
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_115 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 34582430 - 34582665
Alignment:
| Q |
19 |
cttagatgtaaagtaataactaagaaacaacattagccatttataattagaccaagcacaaacaaactaatgatcagcttcacaaaaagattgtcagcta |
118 |
Q |
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| T |
34582430 |
cttagatgtaaagtaataactaagaaacaacattagccatttataattagaccaagcacaaacaaaccaatgatcagcttcacaaaaagattgtcagcta |
34582529 |
T |
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| Q |
119 |
agaaaccaagtctgcatcattaataaactgcaatctagtgatttgatttcattatttttgtttttaatcttatgagttttacaggaatagtgctgaagcc |
218 |
Q |
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| T |
34582530 |
agaaaccaagtctgcatcattaataaactgcaatctagtgatttgatttcattatttttgtttttaatcttatgagttttacaggaatagtgctgaagcc |
34582629 |
T |
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| Q |
219 |
agaaatttcggaactgattgttctgttttatccttt |
254 |
Q |
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| T |
34582630 |
agaaatttcggaactgattgttctgttttgtccttt |
34582665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 71 - 144
Target Start/End: Original strand, 38491944 - 38492017
Alignment:
| Q |
71 |
caagcacaaacaaactaatgatcagcttcacaaaaagattgtcagctaagaaaccaagtctgcatcattaataa |
144 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| | | |||||||||| |||||| |||||||| |
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| T |
38491944 |
caagcacaaacaaattaatgatcagcttcacaaaaagattgataaccaagaaaccaatcctgcattattaataa |
38492017 |
T |
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