View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_116 (Length: 265)
Name: NF20665_low_116
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_116 |
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| [»] scaffold0152 (1 HSPs) |
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Alignment Details
Target: scaffold0152 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: scaffold0152
Description:
Target: scaffold0152; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 265
Target Start/End: Complemental strand, 11154 - 10906
Alignment:
| Q |
17 |
aagaaggaaaaaagattaggaatactccttgtcatccaattaaaccatgttttatgtactgaattatggatattagaaagaaaacaaaagtatacatgac |
116 |
Q |
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| T |
11154 |
aagaaggaaaaaatattaggaatactccttgtcatccaattaaaccatgttttatgtactgaattatggatattagaaagaaaacaaaagtatacatgac |
11055 |
T |
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| Q |
117 |
aacctaccatatagccatccttaatctcatcagctgacaactttttctcataaataaattggaaattcatcaagtcatgcactaaaggcaaaggaataac |
216 |
Q |
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| T |
11054 |
aacctaccatatagccatccttaatctcatcaactgacaactttttctcataaataaattggaaattcatcaagtcatgcactaaaggcaaaggaacaac |
10955 |
T |
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| Q |
217 |
atgaatcaaatacgttggattgtagtttctttcaattttaaacttcatt |
265 |
Q |
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| T |
10954 |
atgaatcaaatacgttggattgtagtttctttcaattttaaacttcatt |
10906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 17 - 159
Target Start/End: Original strand, 2888932 - 2889074
Alignment:
| Q |
17 |
aagaaggaaaaaagattaggaatactccttgtcatccaattaaaccatgttttatgtactgaattatggatattagaaagaaaacaaaagtatacatgac |
116 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2888932 |
aagaaggaaaaaatattaggaatactccttgtcatccaattaaaccatgttttatctactgaattatggatattagaaagaaaacaaaagtatacatgac |
2889031 |
T |
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| Q |
117 |
aacctaccatatagccatccttaatctcatcagctgacaactt |
159 |
Q |
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| T |
2889032 |
aaccgaccatatagtcatccttaatctcatcagctgacaactt |
2889074 |
T |
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