View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20665_low_121 (Length: 258)

Name: NF20665_low_121
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20665_low_121
NF20665_low_121
[»] chr7 (1 HSPs)
chr7 (13-239)||(38631824-38632050)
[»] chr1 (23 HSPs)
chr1 (86-241)||(35224926-35225081)
chr1 (138-241)||(34309414-34309517)
chr1 (138-220)||(35212031-35212113)
chr1 (28-241)||(35270387-35270604)
chr1 (139-220)||(45525533-45525611)
chr1 (141-216)||(45531633-45531708)
chr1 (151-241)||(35263089-35263179)
chr1 (144-234)||(35295863-35295953)
chr1 (86-220)||(8638911-8639048)
chr1 (28-220)||(35219016-35219211)
chr1 (150-236)||(19267712-19267798)
chr1 (163-241)||(35190453-35190531)
chr1 (28-105)||(35248223-35248302)
chr1 (178-241)||(35276639-35276702)
chr1 (57-111)||(19267817-19267871)
chr1 (144-226)||(35194564-35194646)
chr1 (59-112)||(19266237-19266290)
chr1 (188-241)||(35147470-35147523)
chr1 (32-122)||(35190329-35190421)
chr1 (38-111)||(35147327-35147402)
chr1 (28-112)||(35476256-35476341)
chr1 (186-220)||(35476415-35476449)
chr1 (178-234)||(35200037-35200093)
[»] chr3 (3 HSPs)
chr3 (143-241)||(19246970-19247068)
chr3 (143-241)||(17664567-17664665)
chr3 (138-226)||(899768-899856)
[»] chr2 (1 HSPs)
chr2 (146-220)||(33138640-33138714)


Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 13 - 239
Target Start/End: Original strand, 38631824 - 38632050
Alignment:
Q  13 aatattatgctatatatccaagacacaagaccccttgcatattcagtcaatgttgctaaattgtcttctttgtcctaacttctattccttcaacaaagaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38631824 aatattatgctatatatccaagacacaagaccccttgcatattcagtcaatgttgctaaattgtcttctttgtcctaacttctattccttcaacaaagaa 38631923  T
Q  113 gcctctcttcaaatacgcaccatgcttctcgataacactcatctggatttcttcatctttaaggtctgaagtgaagaactctcccatctgaatctccaac 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  38631924 gcctctcttcaaatacgcaccatgcttctcgataacactcatctggatttcttcatctttaaggtctgaagtgaagaactctcccatatgaatctccaac 38632023  T
Q  213 cacccatcgtttcttacactagcacgt 239  Q
    |||||||||||||||||||||||||||    
T  38632024 cacccatcgtttcttacactagcacgt 38632050  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 86 - 241
Target Start/End: Original strand, 35224926 - 35225081
Alignment:
Q  86 cctaacttctattccttcaacaaagaagcctctcttcaaatacgcaccatgcttctcgataacactcatctggatttcttcatctttaaggtctgaagtg 185  Q
    ||||||||||||||||||||||||||| ||||||||| |||   |||| |   | || ||||||||||| |||| |||||||||||  ||| ||||| ||    
T  35224926 cctaacttctattccttcaacaaagaaacctctcttccaatgaccaccctttatatcaataacactcatttggacttcttcatcttctaggcctgaaatg 35225025  T
Q  186 aagaactctcccatctgaatctccaaccacccatcgtttcttacactagcacgttg 241  Q
    |||||||||||||||| |||||| ||||| |||||| |||| ||| ||| ||||||    
T  35225026 aagaactctcccatctcaatctctaaccagccatcgcttctcacattaggacgttg 35225081  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 138 - 241
Target Start/End: Original strand, 34309414 - 34309517
Alignment:
Q  138 ttctcgataacactcatctggatttcttcatctttaaggtctgaagtgaagaactctcccatctgaatctccaaccacccatcgtttcttacactagcac 237  Q
    ||||||| ||| ||||| |||||||||||||||| ||||  |||| |||||||||||||||||| |||||||||||| |||||  |||||||| ||| ||    
T  34309414 ttctcgacaacgctcatttggatttcttcatcttcaaggcttgaattgaagaactctcccatctcaatctccaaccatccatcacttcttacattaggac 34309513  T
Q  238 gttg 241  Q
    ||||    
T  34309514 gttg 34309517  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 138 - 220
Target Start/End: Original strand, 35212031 - 35212113
Alignment:
Q  138 ttctcgataacactcatctggatttcttcatctttaaggtctgaagtgaagaactctcccatctgaatctccaaccacccatc 220  Q
    ||||||| ||||||||| |||||||||||||||| ||||   ||| |||||||||||||||||| ||||||||||||||||||    
T  35212031 ttctcgacaacactcatttggatttcttcatcttcaaggctagaattgaagaactctcccatctcaatctccaaccacccatc 35212113  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 241
Target Start/End: Original strand, 35270387 - 35270604
Alignment:
Q  28 atccaagacacaagaccccttgcata-ttcagtcaatgttgctaaattgtctt---ctttgtcctaacttctattccttcaacaaagaagcctctcttca 123  Q
    ||||| ||| |||||||||||||||| |||||| ||||||| | |||||| ||   ||| | |||||||||||||||||||| ||  |  |||||||||     
T  35270387 atccacgacccaagaccccttgcatagttcagtgaatgttggttaattgtgttatacttaggcctaacttctattccttcaagaactagacctctcttcc 35270486  T
Q  124 aatacgcaccatgcttctcgataacactcatctggatttcttcatctttaaggtctgaagtgaagaactctcccatctgaatctccaaccacccatcgtt 223  Q
    |||   |||| |   |||  || ||| ||||||||| |||||||| ||  | | ||||| |||||||||| ||||||| ||||||||||||||||||  |    
T  35270487 aattaccaccctttgtctgtatcacattcatctggacttcttcattttctatgcctgaattgaagaactcccccatctcaatctccaaccacccatcact 35270586  T
Q  224 tcttacactagcacgttg 241  Q
    ||| ||||||| ||||||    
T  35270587 tctcacactaggacgttg 35270604  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 139 - 220
Target Start/End: Original strand, 45525533 - 45525611
Alignment:
Q  139 tctcgataacactcatctggatttcttcatctttaaggtctgaagtgaagaactctcccatctgaatctccaaccacccatc 220  Q
    ||||||||||||||||||||| |||||||| || |||| ||||| |   |||||||||||||| ||||||||||||||||||    
T  45525533 tctcgataacactcatctggacttcttcattttcaaggcctgaatt---gaactctcccatctcaatctccaaccacccatc 45525611  T

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Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 141 - 216
Target Start/End: Original strand, 45531633 - 45531708
Alignment:
Q  141 tcgataacactcatctggatttcttcatctttaaggtctgaagtgaagaactctcccatctgaatctccaaccacc 216  Q
    |||||||||||||| |||| |||||||| || |||| ||||| |||||||||||||||||| ||||||| ||||||    
T  45531633 tcgataacactcatatggacttcttcattttcaaggcctgaattgaagaactctcccatctcaatctcccaccacc 45531708  T

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Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 151 - 241
Target Start/End: Original strand, 35263089 - 35263179
Alignment:
Q  151 tcatctggatttcttcatctttaaggtctgaagtgaagaactctcccatctgaatctccaaccacccatcgtttcttacactagcacgttg 241  Q
    ||||||||| |||||||| ||  | | ||||| |||||||||| ||||||| ||||||||||||||||||| |||| ||||||| ||||||    
T  35263089 tcatctggacttcttcattttctatgcctgaactgaagaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgttg 35263179  T

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Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 234
Target Start/End: Complemental strand, 35295953 - 35295863
Alignment:
Q  144 ataacactcatctggatttcttcatctttaaggtctgaagtgaagaactctcccatctgaatctccaaccacccatcgtttcttacactag 234  Q
    ||||||||||| |||| ||||||||||   | | ||||| |||||||||||||||||| ||||||||||||||||||  |||| |||||||    
T  35295953 ataacactcatttggacttcttcatctactaagcctgaattgaagaactctcccatctcaatctccaaccacccatcacttctcacactag 35295863  T

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Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 86 - 220
Target Start/End: Original strand, 8638911 - 8639048
Alignment:
Q  86 cctaacttctattccttcaacaaagaagcctctcttcaaatacgcaccatgctt---ctcgataacactcatctggatttcttcatctttaaggtctgaa 182  Q
    ||||||||||||||||||||||||||| ||||||||| ||     ||||| |||   | |  ||| |||||| |||| |||||||||||  | | |||||    
T  8638911 cctaacttctattccttcaacaaagaaacctctcttccaagtataaccatcctttatcccagtaatactcatttggacttcttcatcttctaagcctgaa 8639010  T
Q  183 gtgaagaactctcccatctgaatctccaaccacccatc 220  Q
     |||||||||||||||||| | ||||||||||||||||    
T  8639011 ttgaagaactctcccatctcagtctccaaccacccatc 8639048  T

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Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 220
Target Start/End: Original strand, 35219016 - 35219211
Alignment:
Q  28 atccaagacacaagaccccttgcata-ttcagtcaatgttgctaaattgtcttcttt-gtcctaacttctattccttcaacaaagaagcctctcttcaaa 125  Q
    |||||||||||||||||||| ||||| ||||||  |||||| | | |||||||| || | ||||||||||||||||||||||||||| ||||||||| ||    
T  35219016 atccaagacacaagacccct-gcatagttcagtgtatgttgttta-ttgtcttccttaggcctaacttctattccttcaacaaagaaacctctcttccaa 35219113  T
Q  126 tacgcaccatgct---tctcgataacactcatctggatttcttcatctttaaggtctgaagtgaagaactctcccatctgaatctccaaccacccatc 220  Q
    ||   ||||| ||   || |  ||| |||||| |||| ||||||||||   | | ||||| |||||||||||||||||| | | ||||||||| ||||    
T  35219114 taataaccatcctttatcccagtaatactcatttggacttcttcatctggtaagcctgaaatgaagaactctcccatctcagtttccaaccactcatc 35219211  T

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Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 236
Target Start/End: Complemental strand, 19267798 - 19267712
Alignment:
Q  150 ctcatctggatttcttcatctttaaggtctgaagtgaagaactctcccatctgaatctccaaccacccatcgtttcttacactagca 236  Q
    ||||| |||| ||||||  |||||||| ||||| ||||||| ||||| || ||||| ||||||||||| |||||||| |||||||||    
T  19267798 ctcatatggaattcttctactttaaggcctgaaatgaagaaatctccgatttgaatttccaaccacccgtcgtttctcacactagca 19267712  T

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Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 241
Target Start/End: Original strand, 35190453 - 35190531
Alignment:
Q  163 cttcatctttaaggtctgaagtgaagaactctcccatctgaatctccaaccacccatcgtttcttacactagcacgttg 241  Q
    |||||||||  ||| ||||| ||||||||||||| |||| ||||||||||||||||||  |||| ||||||| ||||||    
T  35190453 cttcatcttctaggcctgaattgaagaactctccgatctcaatctccaaccacccatcacttctcacactaggacgttg 35190531  T

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Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 105
Target Start/End: Original strand, 35248223 - 35248302
Alignment:
Q  28 atccaagacacaagaccccttgcata-ttcagtcaatgttgctaaattgtctt-ctttgtcctaacttctattccttcaa 105  Q
    |||||||||| ||||||||||||||| |||||| ||||||||| |||||| || ||| |  |||||||||||||||||||    
T  35248223 atccaagacataagaccccttgcatagttcagtgaatgttgcttaattgtattacttaggtctaacttctattccttcaa 35248302  T

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Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 241
Target Start/End: Original strand, 35276639 - 35276702
Alignment:
Q  178 ctgaagtgaagaactctcccatctgaatctccaaccacccatcgtttcttacactagcacgttg 241  Q
    ||||| |||||||||| ||||||| ||||||||||||||||||  |||| ||||||| ||||||    
T  35276639 ctgaattgaagaactcccccatctcaatctccaaccacccatctcttctcacactaggacgttg 35276702  T

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Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 19267871 - 19267817
Alignment:
Q  57 agtcaatgttgctaaattgtcttctttgtcctaacttctattccttcaacaaaga 111  Q
    ||||||||||||  ||||||||||||  |||| ||||||||||||||||||||||    
T  19267871 agtcaatgttgcctaattgtcttcttgttcctgacttctattccttcaacaaaga 19267817  T

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Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 226
Target Start/End: Original strand, 35194564 - 35194646
Alignment:
Q  144 ataacactcatctggatttcttcatctttaaggtctgaagtgaagaactctcccatctgaatctccaaccacccatcgtttct 226  Q
    ||||||||||| || | ||||||||||| ||||  || | |||||||||| ||||| | ||||||||||||||||||| ||||    
T  35194564 ataacactcatttgcacttcttcatcttcaaggcttggattgaagaactcccccatttcaatctccaaccacccatcgcttct 35194646  T

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Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 19266237 - 19266290
Alignment:
Q  59 tcaatgttgctaaattgtcttctttgtcctaacttctattccttcaacaaagaa 112  Q
    ||||||||||||||||||||| |||| ||  ||||||||| |||||||||||||    
T  19266237 tcaatgttgctaaattgtcttatttggccggacttctattacttcaacaaagaa 19266290  T

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Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 35147470 - 35147523
Alignment:
Q  188 gaactctcccatctgaatctccaaccacccatcgtttcttacactagcacgttg 241  Q
    |||||| ||||||| ||||||||||||||||||| |||| ||||||| ||||||    
T  35147470 gaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgttg 35147523  T

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Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 122
Target Start/End: Original strand, 35190329 - 35190421
Alignment:
Q  32 aagacacaagaccccttgcata-ttcagtcaatgttgctaaattgtctt-ctttgtcctaacttctattccttcaacaaagaagcctctcttc 122  Q
    ||||| |||||||||||||||| ||||   ||||||||| ||| ||||| ||| | |||||||||||||||||||| |||||  |||||||||    
T  35190329 aagacgcaagaccccttgcatagttcacggaatgttgctgaatggtcttacttaggcctaacttctattccttcaagaaagagacctctcttc 35190421  T

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Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 111
Target Start/End: Original strand, 35147327 - 35147402
Alignment:
Q  38 caagaccccttgcata-ttcagtcaatgttgctaaattgtctt-ctttgtcctaacttctattccttcaacaaaga 111  Q
    |||||||||||||||| ||||   ||||||||| ||| ||||| ||| | ||||||||||||||||||||||||||    
T  35147327 caagaccccttgcatagttcatggaatgttgcttaatggtcttacttaggcctaacttctattccttcaacaaaga 35147402  T

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Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 112
Target Start/End: Original strand, 35476256 - 35476341
Alignment:
Q  28 atccaagacacaagaccccttgcata-ttcagtcaatgttgctaaattgtcttcttt-gtcctaacttctattccttcaacaaagaa 112  Q
    ||||||||| ||||||||||  |||| |||||| ||||||||| |||||||||| || |  ||||||||||||||||||| ||||||    
T  35476256 atccaagacgcaagaccccta-cataattcagtgaatgttgcttaattgtcttccttaggtctaacttctattccttcaagaaagaa 35476341  T

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Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 220
Target Start/End: Original strand, 35476415 - 35476449
Alignment:
Q  186 aagaactctcccatctgaatctccaaccacccatc 220  Q
    |||||||||||||||| ||||||||||||||||||    
T  35476415 aagaactctcccatctcaatctccaaccacccatc 35476449  T

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Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 35200037 - 35200093
Alignment:
Q  178 ctgaagtgaagaactctcccatctgaatctccaaccacccatcgtttcttacactag 234  Q
    ||||| |||||||||| || || | ||||||||||||||||||| |||| |||||||    
T  35200037 ctgaattgaagaactccccgatttcaatctccaaccacccatcgcttctcacactag 35200093  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 241
Target Start/End: Complemental strand, 19247068 - 19246970
Alignment:
Q  143 gataacactcatctggatttcttcatctttaaggtctgaagtgaagaactctcccatctgaatctccaaccacccatcgtttcttacactagcacgttg 241  Q
    |||||||||||| ||||||||||||||||| |||  |||| | ||||| |||||||||| |||||||||||| |||||   ||| ||||||| ||||||    
T  19247068 gataacactcatgtggatttcttcatctttgaggcttgaattaaagaattctcccatctcaatctccaaccatccatcacatctaacactaggacgttg 19246970  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 241
Target Start/End: Complemental strand, 17664665 - 17664567
Alignment:
Q  143 gataacactcatctggatttcttcatctttaaggtctgaagtgaagaactctcccatctgaatctccaaccacccatcgtttcttacactagcacgttg 241  Q
    |||||||||||| |||| |||||||||||| |||  |||| | ||||| |||||||||| |||||||||||| |||||   ||| ||||||| ||||||    
T  17664665 gataacactcatgtggacttcttcatctttgaggcttgaattaaagaattctcccatctcaatctccaaccatccatcacatctaacactaggacgttg 17664567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 226
Target Start/End: Complemental strand, 899856 - 899768
Alignment:
Q  138 ttctcgataacactcatctggatttcttcatctttaaggtctgaagtgaagaactctcccatctgaatctccaaccacccatcgtttct 226  Q
    ||||||| ||||||||| |||| ||||||  ||| |||   |||| |||| ||||||||||||| ||||||||||||||||||| ||||    
T  899856 ttctcgacaacactcatttggacttcttctccttcaagtcttgaattgaataactctcccatctcaatctccaaccacccatcgcttct 899768  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 220
Target Start/End: Complemental strand, 33138714 - 33138640
Alignment:
Q  146 aacactcatctggatttcttcatctttaaggtctgaagtgaagaactctcccatctgaatctccaaccacccatc 220  Q
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T  33138714 aacactcatacggacttcttcatctttagggcttgaattgaagaattttcccatctcaatctccaaccacccatc 33138640  T

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