View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_124 (Length: 256)
Name: NF20665_low_124
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_124 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 26305917 - 26305695
Alignment:
| Q |
16 |
cttaaaagaattttcatatcaatgcattgtggccatagaagaatcaaatatggagtggcattgaatttggtggcaatatgggtaacctggaggatctcca |
115 |
Q |
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| T |
26305917 |
cttaaaagaattttcatatcaatgcattgtggccatagaagaatcaaatatggagtggcattgaatttggtggcaatatggataacctggaggatctcca |
26305818 |
T |
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| Q |
116 |
tataaaattaaaatgatgctactgtttgaagacttgtaatgtaataatatttactcttttgcaagtaacatgnnnnnnncattcttaataaaattgacag |
215 |
Q |
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| T |
26305817 |
tataaaattaaaatgatgctactgtttgaagacttgtaatgtaataatatttactcttttgcaagtaacatgtttttttcattcttaataaaattgacgg |
26305718 |
T |
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| Q |
216 |
gaaactaaataatatgacaatcc |
238 |
Q |
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||||||||||||||||||||||| |
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| T |
26305717 |
gaaactaaataatatgacaatcc |
26305695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 20 - 155
Target Start/End: Original strand, 8531027 - 8531163
Alignment:
| Q |
20 |
aaagaattttcatatca-atgcattgtggccatagaagaatcaaatatggagtggcattgaatttggtggcaatatgggtaacctggaggatctccatat |
118 |
Q |
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| T |
8531027 |
aaagaattttcatatcagatgcattgtggctgtagcagaatcaaatatggagtgccattggatttggtggctatatgggtaacttggaggagctccatat |
8531126 |
T |
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| Q |
119 |
aaaattaaaatgatgctactgtttgaagacttgtaat |
155 |
Q |
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| T |
8531127 |
aaaattaaaatgatgctactgtttgaagacttgtaat |
8531163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 182
Target Start/End: Original strand, 8531384 - 8531416
Alignment:
| Q |
150 |
tgtaatgtaataatatttactcttttgcaagta |
182 |
Q |
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| T |
8531384 |
tgtagtgtaataatatttactcttttgcaagta |
8531416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 155
Target Start/End: Complemental strand, 5155210 - 5155074
Alignment:
| Q |
20 |
aaagaattttcatatca-atgcattgtggccatagaagaatcaaatatggagtggcattgaatttggtggcaatatgggtaacctggaggatctccatat |
118 |
Q |
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| T |
5155210 |
aaagaatttttataccagatgcactgtggctgtagcagaatcaaatatggagtgccattggatttggtggctatatgggtaacttggaggagctccatat |
5155111 |
T |
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| Q |
119 |
aaaattaaaatgatgctactgtttgaagacttgtaat |
155 |
Q |
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| T |
5155110 |
aaaattaaaatgatgctactgtctgaagacttgtaat |
5155074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 114 - 155
Target Start/End: Complemental strand, 3384521 - 3384480
Alignment:
| Q |
114 |
catataaaattaaaatgatgctactgtttgaagacttgtaat |
155 |
Q |
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| T |
3384521 |
catataaaattaaaatgatgctactgtttgaagacttgtaat |
3384480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 184
Target Start/End: Complemental strand, 3384355 - 3384321
Alignment:
| Q |
150 |
tgtaatgtaataatatttactcttttgcaagtaac |
184 |
Q |
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|||||||||||||||||||||||| |||||||||| |
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| T |
3384355 |
tgtaatgtaataatatttactcttctgcaagtaac |
3384321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 182
Target Start/End: Complemental strand, 5154855 - 5154823
Alignment:
| Q |
150 |
tgtaatgtaataatatttactcttttgcaagta |
182 |
Q |
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|||||||||||||||||||||||| |||||||| |
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| T |
5154855 |
tgtaatgtaataatatttactcttctgcaagta |
5154823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 155
Target Start/End: Complemental strand, 19397672 - 19397541
Alignment:
| Q |
20 |
aaagaattttcatatca-atgcattgtggccatagaagaatcaaatatggagtggcattgaatttggtggcaatatgggtaacctggaggatctccatat |
118 |
Q |
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||||||||||||||||| |||||||||||| |||| |||||||||||||||||| | |||||||||| ||||||||||||||||| | |||||||| |
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| T |
19397672 |
aaagaattttcatatcagatgcattgtggctatagcagaatcaaatatggagtgtc-----atttggtggctatatgggtaacctggagtagctccatat |
19397578 |
T |
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| Q |
119 |
aaaattaaaatgatgctactgtttgaagacttgtaat |
155 |
Q |
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||| ||||||||||||||||||||||||||||||||| |
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| T |
19397577 |
aaatttaaaatgatgctactgtttgaagacttgtaat |
19397541 |
T |
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