View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20665_low_126 (Length: 254)

Name: NF20665_low_126
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20665_low_126
NF20665_low_126
[»] chr8 (4 HSPs)
chr8 (1-142)||(2266894-2267038)
chr8 (138-235)||(2266394-2266491)
chr8 (1-100)||(30423439-30423541)
chr8 (31-101)||(15944918-15944988)
[»] chr1 (2 HSPs)
chr1 (17-98)||(14997283-14997366)
chr1 (1-101)||(3090959-3091062)
[»] chr6 (2 HSPs)
chr6 (13-101)||(22351703-22351795)
chr6 (71-103)||(22342649-22342681)
[»] chr5 (3 HSPs)
chr5 (1-101)||(10627590-10627696)
chr5 (1-101)||(31782310-31782412)
chr5 (1-100)||(20437145-20437249)
[»] chr4 (5 HSPs)
chr4 (31-100)||(4874336-4874408)
chr4 (1-100)||(25613810-25613914)
chr4 (26-101)||(16639077-16639155)
chr4 (31-100)||(32273806-32273877)
chr4 (13-102)||(4885110-4885204)
[»] chr3 (2 HSPs)
chr3 (56-101)||(27703015-27703059)
chr3 (1-69)||(46966536-46966604)


Alignment Details
Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 2267038 - 2266894
Alignment:
Q  1 ttttgtttgaatttatttgtcacctgcttaatttgattgcttggttttatttgctcacacatcaagtttat---ggtgtgatttttgcaacgaattcaca 97  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||    
T  2267038 ttttgtttgaatttatttgtcacctgcttgatttgattgtttggttttatttgctcacacatcaagtttatattggtgtgatttttgcaacgaattcaca 2266939  T
Q  98 acaacaaatagttaatattcacattaatttcactaccaaattttc 142  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  2266938 acaacaaatagttaatattcacattaatttcactaccaaattttc 2266894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 138 - 235
Target Start/End: Complemental strand, 2266491 - 2266394
Alignment:
Q  138 ttttccaaataatattagtgaaaattgctacaagtgtttataacatgagactcatggagaattatgttctaaaaacataattcaaaacttattcatgt 235  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2266491 ttttctaaataatattagtgaaaattgctacaagtgtttataacatgagactcatggagaattatgttctaaaaacataattcaaaacttattcatgt 2266394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 30423439 - 30423541
Alignment:
Q  1 ttttgtttgaatttatttgtcacctgcttaatttgattgcttggttttatttgct-cacacatcaagttt--atggtgtgatttttgcaacgaattcaca 97  Q
    |||||||||||||   |||||||| |||| ||||||||||||||||||||||||| ||||||||||||||   ||||||||||||||||| |||||||||    
T  30423439 ttttgtttgaattatattgtcacccgcttgatttgattgcttggttttatttgctccacacatcaagttttattggtgtgatttttgcaatgaattcaca 30423538  T
Q  98 aca 100  Q
    |||    
T  30423539 aca 30423541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 101
Target Start/End: Original strand, 15944918 - 15944988
Alignment:
Q  31 atttgattgcttggttttatttgctc-acacatcaagtttat-ggtgtgatttttgcaacgaattcacaacaa 101  Q
    ||||||||||||||||| |||||||| ||||||||| ||||| ||||||||||  ||||||||||||||||||    
T  15944918 atttgattgcttggttt-atttgctccacacatcaaatttattggtgtgattta-gcaacgaattcacaacaa 15944988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 14997283 - 14997366
Alignment:
Q  17 ttgtcacctgcttaatttgattgcttggttttatttgct-cacacatcaagtttat-ggtgtgatttttgcaacgaattcacaa 98  Q
    ||||||||||||| ||||| ||||||||||||||||||| ||||| |||||||||| |||||||||||||||| ||||||||||    
T  14997283 ttgtcacctgcttgatttgcttgcttggttttatttgctccacacgtcaagtttatcggtgtgatttttgcaatgaattcacaa 14997366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 3091062 - 3090959
Alignment:
Q  1 ttttgtttgaatttatttgtcacctgcttaatttgattgcttggttttatttgct-cacacatcaagttt---atggtgtgatttttgcaacgaattcac 96  Q
    |||||||||||||   |||||| | |||| |||||||| |||||||||||||||| ||||||| || |||    ||||||| ||||||||||||||||||    
T  3091062 ttttgtttgaattatattgtcatccgcttgatttgatttcttggttttatttgctccacacatgaaatttttattggtgtg-tttttgcaacgaattcac 3090964  T
Q  97 aacaa 101  Q
    |||||    
T  3090963 aacaa 3090959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 22351795 - 22351703
Alignment:
Q  13 ttatttgtcacctgcttaatttgattgcttggtttta-tttgctc-acacatcaagttta--tggtgtgatttttgcaacgaattcacaacaa 101  Q
    |||||||| ||| |||| |||||||| |||||| ||| ||||||| |||||||||||||   ||||||||||||| |||||||||||||||||    
T  22351795 ttatttgttacccgcttgatttgattacttggtattaatttgctccacacatcaagttttattggtgtgatttttacaacgaattcacaacaa 22351703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 22342681 - 22342649
Alignment:
Q  71 tggtgtgatttttgcaacgaattcacaacaaca 103  Q
    ||||||||||||| |||||||||||||||||||    
T  22342681 tggtgtgatttttacaacgaattcacaacaaca 22342649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 10627590 - 10627696
Alignment:
Q  1 ttttgtttgaatttatttgtcacctgcttaatttgattgcttggtttt-atttgct-cacacatcaagttta----tggtgtgatttttgcaacgaattc 94  Q
    ||||||||||||| | |||||||| |||| |||||||||||||||||| ||||||| ||| |||||||||||    ||||||| ||||  ||| ||||||    
T  10627590 ttttgtttgaattaaattgtcacccgcttgatttgattgcttggttttaatttgctccacgcatcaagtttattattggtgtggttttcacaatgaattc 10627689  T
Q  95 acaacaa 101  Q
    |||||||    
T  10627690 acaacaa 10627696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 31782412 - 31782310
Alignment:
Q  1 ttttgtttgaatttatttgtcacctgcttaatttgattgcttggttttatttgctc-acacatcaagttta--tggtgtgatttttgcaacgaattcaca 97  Q
    |||||||||||||   |||||||| |||| |||||||| |||||||| || ||||| |||||||||||||   |||| ||||||||||||| ||||||||    
T  31782412 ttttgtttgaattatattgtcacccgcttgatttgatttcttggttt-atatgctccacacatcaagttttattggtatgatttttgcaacaaattcaca 31782314  T
Q  98 acaa 101  Q
    ||||    
T  31782313 acaa 31782310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 20437145 - 20437249
Alignment:
Q  1 ttttgtttgaatttatttgtcacctgcttaatttgattgcttggtttta-tttgctca-cacatcaagtttat----ggtgtgatttttgcaacgaattc 94  Q
    ||||||||||||| |||||  ||| |||| |||||||| |||| | ||| |||||||| ||||||||||||||    |||||||||||  ||||||||||    
T  20437145 ttttgtttgaatt-atttgctacccgcttgatttgattacttgatattaatttgctcaacacatcaagtttattgttggtgtgattttcacaacgaattc 20437243  T
Q  95 acaaca 100  Q
    ||||||    
T  20437244 acaaca 20437249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 4874408 - 4874336
Alignment:
Q  31 atttgattgcttggttttatttgctc-acacatcaagttta--tggtgtgatttttgcaacgaattcacaaca 100  Q
    ||||||||||||||||| || ||||| ||| |||||||||   ||||||||||||||||||||||||||||||    
T  4874408 atttgattgcttggtttaatatgctccacatatcaagttttgttggtgtgatttttgcaacgaattcacaaca 4874336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 25613914 - 25613810
Alignment:
Q  1 ttttgtttgaatttatttgtcacctgcttaatttgattgcttggtttta-tttgctca-cacatcaagtttat----ggtgtgatttttgcaacgaattc 94  Q
    |||||||||||||  ||| |||||||||| ||||||||| ||||||||| |||||||| |||||||||||| |    |||||| ||||||||||||||||    
T  25613914 ttttgtttgaattattttttcacctgcttgatttgattgtttggttttaatttgctcaacacatcaagttttttattggtgtg-tttttgcaacgaattc 25613816  T
Q  95 acaaca 100  Q
    | ||||    
T  25613815 ataaca 25613810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 16639077 - 16639155
Alignment:
Q  26 gcttaatttgattgcttggttttatttgct-cacacatcaagttt---atggtgtgatttttgcaacgaattcacaacaa 101  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||    |||| || ||||||||| |||||||||||||    
T  16639077 gcttgatttgattgcttggttttatttgctccacacatcaagtttttattggtatg-tttttgcaaagaattcacaacaa 16639155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 32273877 - 32273806
Alignment:
Q  31 atttgattgcttggttttatttgctc-acacatcaagttta--tggtgtgatttttgcaacgaattcacaaca 100  Q
    ||||||||| ||||||| |||||||| | |||||||||||   ||||||||||||||||||||||||||||||    
T  32273877 atttgattgtttggttt-atttgctccagacatcaagttttattggtgtgatttttgcaacgaattcacaaca 32273806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 4885110 - 4885204
Alignment:
Q  13 ttatttgtcacctgcttaatttgattgcttggtttta-tttgctc-acacatcaagtttat---ggtgtgatttttgcaacgaattcacaacaac 102  Q
    |||||||| ||| |||| |||||||| |||||| ||| ||||||| || |||||||||| |   |||||||||||| ||||||||||||||||||    
T  4885110 ttatttgttacccgcttgatttgattacttggtattaatttgctccacgcatcaagtttttattggtgtgatttttacaacgaattcacaacaac 4885204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 27703059 - 27703015
Alignment:
Q  56 cacacatcaagtttatggtgtgatttttgcaacgaattcacaacaa 101  Q
    |||||||||||||  ||||||||||||| |||||||||||||||||    
T  27703059 cacacatcaagttattggtgtgattttt-caacgaattcacaacaa 27703015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 46966604 - 46966536
Alignment:
Q  1 ttttgtttgaatttatttgtcacctgcttaatttgattgcttggttttatttgct-cacacatcaagttt 69  Q
    |||||||||||||   ||||||||  || ||||||||||||||| |||||||||| ||||||||||||||    
T  46966604 ttttgtttgaattatattgtcacccactcaatttgattgcttgg-tttatttgctccacacatcaagttt 46966536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University