View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_13 (Length: 577)
Name: NF20665_low_13
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 544; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 1 - 564
Target Start/End: Original strand, 35990714 - 35991277
Alignment:
| Q |
1 |
gctaagtgggggagggagtgttccagctgagaaggcatctgctgcgacttgggtgaaaatggtgaatcagatccaaaatgcagctttatctactcctctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35990714 |
gctaagtgggggagggagtgttccagctgagaaggcatctgctgagacttgggtgaaaatggtgaatcagatccaaaatgcagctttatctactcctctt |
35990813 |
T |
|
| Q |
101 |
gggattccaatgatttatgggatagatgctgttcatggtcacaataatgtctacaacgctactatttttcctcacaatgttggtcttggagttaccaggc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35990814 |
gggattccaatgatttatgggatagatgctgttcatggtcacaataatgtctacaatgctactatttttcctcacaatgttggtcttggagttaccaggc |
35990913 |
T |
|
| Q |
201 |
aagtttatgtatatgcaggaattttaatagccatgaaatgattgaaaagaagaaagaattagtagtgacattaaattcatatttgataatttgtaactgg |
300 |
Q |
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| T |
35990914 |
aagtttatgtatatgcaggaattttaatagccatgaaatgattgaaaagaagaaagaattagcagtgacattaaattcatatttgataatttgtaactgg |
35991013 |
T |
|
| Q |
301 |
aagctatacttgaagaagtgaacctttgcgataaaaacaaaccttgcaatttagtgcattttcttgcttttattgtaatggaatctactgtttattaggg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35991014 |
aagctatacttgaagaagtgaacctttgcgataaaaacaaaccttgcaatttagtgcattttcttgcttttattgtaatggaatctactgtttattaggg |
35991113 |
T |
|
| Q |
401 |
atccagtgctaataaaaaagattggagaagcaactgcccttgaagttagagctactggaattccatacgtgtttgctccatgtatcgcggtaaagaaaca |
500 |
Q |
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| T |
35991114 |
atccagtgctaataaaaaagattggagaagcaactgcccttgaagttagagctactggaattccatatgtgtttgctccatgtatcgcggtaaagaaaca |
35991213 |
T |
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| Q |
501 |
gtgtttcaatattctgttatttaaatcatatgtaacattgatcaagtttgctgatatgatgatg |
564 |
Q |
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| T |
35991214 |
gtgtttcaatattctgttatttaaatcatatgtaacattgatcaagtttgctgatatgttgatg |
35991277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 98 - 191
Target Start/End: Original strand, 9989709 - 9989802
Alignment:
| Q |
98 |
cttgggattccaatgatttatgggatagatgctgttcatggtcacaataatgtctacaacgctactatttttcctcacaatgttggtcttggag |
191 |
Q |
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| T |
9989709 |
cttggaattccaatgatttatggaattgatgctgttcatggaaataataatgtatataaagctactatttttcctcacaatgttggtctaggag |
9989802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 98 - 184
Target Start/End: Original strand, 9996109 - 9996195
Alignment:
| Q |
98 |
cttgggattccaatgatttatgggatagatgctgttcatggtcacaataatgtctacaacgctactatttttcctcacaatgttggt |
184 |
Q |
| |
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| T |
9996109 |
cttggaattccaatgatatatggaattgatgctgttcatggaaataataatgtctataacgcaactatttttcctcacaatgttggt |
9996195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 98 - 184
Target Start/End: Original strand, 10002034 - 10002120
Alignment:
| Q |
98 |
cttgggattccaatgatttatgggatagatgctgttcatggtcacaataatgtctacaacgctactatttttcctcacaatgttggt |
184 |
Q |
| |
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| T |
10002034 |
cttggaattccaatgatatatggaattgatgctgttcatggaaataataatgtctataacgcaactatttttcctcacaatgttggt |
10002120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 98 - 191
Target Start/End: Original strand, 10011588 - 10011681
Alignment:
| Q |
98 |
cttgggattccaatgatttatgggatagatgctgttcatggtcacaataatgtctacaacgctactatttttcctcacaatgttggtcttggag |
191 |
Q |
| |
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||||| ||||||||||||||||| || |||||||||||||| || || ||||| || || ||||||||||| ||||||||||||||||| |||| |
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| T |
10011588 |
cttggaattccaatgatttatggaattgatgctgttcatggacataacaatgtttataaagctactattttccctcacaatgttggtctaggag |
10011681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 467
Target Start/End: Original strand, 9990262 - 9990311
Alignment:
| Q |
418 |
aagattggagaagcaactgcccttgaagttagagctactggaattccata |
467 |
Q |
| |
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| T |
9990262 |
aagattggtgatgcaactgctcttgaagctagagcaactggaattccata |
9990311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 421 - 493
Target Start/End: Original strand, 10011817 - 10011889
Alignment:
| Q |
421 |
attggagaagcaactgcccttgaagttagagctactggaattccatacgtgtttgctccatgtatcgcggtaa |
493 |
Q |
| |
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||||| ||||||||||| ||||||| |||||| || ||||||||||| || || || || || |||||||||| |
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| T |
10011817 |
attggtgaagcaactgctcttgaagctagagcaacgggaattccatatgtcttcgcgccttgcatcgcggtaa |
10011889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 104 - 205
Target Start/End: Complemental strand, 11247194 - 11247093
Alignment:
| Q |
104 |
attccaatgatttatgggatagatgctgttcatggtcacaataatgtctacaacgctactatttttcctcacaatgttggtcttggagttaccaggcaag |
203 |
Q |
| |
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||||| ||||| ||||| || ||||| |||||||| |||||||||||||| || ||||| || ||||| || |||||||| |||||| ||||||||||| |
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| T |
11247194 |
attcccatgatgtatggtattgatgccgttcatggacacaataatgtctataatgctaccatatttccccataatgttgggcttggatgtaccaggcaag |
11247095 |
T |
|
| Q |
204 |
tt |
205 |
Q |
| |
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|| |
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|
| T |
11247094 |
tt |
11247093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 206
Target Start/End: Complemental strand, 33356936 - 33356828
Alignment:
| Q |
98 |
cttgggattccaatgatttatgggatagatgctgttcatggtcacaataatgtctacaacgctactatttttcctcacaatgttggtcttggagttacca |
197 |
Q |
| |
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||||| |||||||| |||||||||| |||||||||||||| ||| ||| ||||| || |||||||||||||||||| |||| || |||| ||||| |
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| T |
33356936 |
cttggaattccaattttttatgggattgatgctgttcatggcaacagccctgtttacaaagcaactatttttcctcacaatattgggctgggagctacca |
33356837 |
T |
|
| Q |
198 |
ggcaagttt |
206 |
Q |
| |
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|| |||||| |
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|
| T |
33356836 |
ggtaagttt |
33356828 |
T |
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