View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20665_low_135 (Length: 251)
Name: NF20665_low_135
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_135 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 13773843 - 13774072
Alignment:
| Q |
1 |
ataatacatcaattatctacacatgatgcatcactttttgcctgtgttgcttggagcatttggaagcaatggaataacaaagtctggcacaatactacaa |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13773843 |
ataatacatcaaatatctacacatgatgcatcactttttgcttgtgttgcttggagcatttggaagcaatggaataacaaagtctggcacaatactacaa |
13773942 |
T |
|
| Q |
101 |
aagctcaaactagtgttctcgtccgcgctcaacactgttgtctgactggaaactgtttgcgaagctgcagtctgaactgatatggagcaggctgctacag |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13773943 |
aagctcaaactagtgttctcgtgcgcgctcaacactgttgtctgactggaaactgtttgtgaagctgcagtctgaactgatatggagcaggctgctacag |
13774042 |
T |
|
| Q |
201 |
gttgtagcggctggaaaaaaccagcagcag |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
13774043 |
gttgtagcggctggaaaaaaccagcagcag |
13774072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 58 - 233
Target Start/End: Original strand, 13774786 - 13774962
Alignment:
| Q |
58 |
atttggaagcaatggaataacaaagtctggcacaatactacaaaagctcaaactagtgttctcgtccgcgctcaa-cactgttgtctgactggaaactgt |
156 |
Q |
| |
|
||||||||||||||||| ||| |||||||| ||||||||| | | |||||||||| ||||||| | ||||||||| | || ||||| || ||||| ||| |
|
|
| T |
13774786 |
atttggaagcaatggaacaacgaagtctggaacaatactaaagatgctcaaactaatgttctcatgcgcgctcaagcgctattgtccgatcggaaattgt |
13774885 |
T |
|
| Q |
157 |
ttgcgaagctgcagtctgaactgatatggagcaggctgctacaggttgtagcggctggaaaaaaccagcagcaggac |
233 |
Q |
| |
|
||| |||||||||||| ||||||||||||| ||||||||| || ||||||| | |||||||||| |||||||||||| |
|
|
| T |
13774886 |
ttgtgaagctgcagtccgaactgatatggaacaggctgctccaagttgtagtgtctggaaaaaatcagcagcaggac |
13774962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University