View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_139 (Length: 250)
Name: NF20665_low_139
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_139 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 243
Target Start/End: Complemental strand, 34186649 - 34186423
Alignment:
| Q |
17 |
attctccacttttcatcgacaaaatttcccaatcgcgtcttaaggcctgaagctgtgctctcttcactctagcagtcccttggtatttcttctttaaaga |
116 |
Q |
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| T |
34186649 |
attctccacttttcatcgacaaaatttcccaatcgcgtcttaaggcctgaagctgtgctctcttcactctagcagtcccttggtatttcttctttaaaga |
34186550 |
T |
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| Q |
117 |
atcccaaatctccttcgacgtccccttattcagaattgtttcaagcacagctcgatcaattgcttgaaagagataattttttgccttcaaatccttcagc |
216 |
Q |
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| T |
34186549 |
atcccaaatctccttcgacgtccccttattcagaattgtttcaagcacagctcgatcaattgcttgaaagagataattttttgccttcaaatccttcagc |
34186450 |
T |
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| Q |
217 |
ttcaactcctccaatgttttcttctca |
243 |
Q |
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||||||||||||||||||||||||||| |
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| T |
34186449 |
ttcaactcctccaatgttttcttctca |
34186423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 11847771 - 11847703
Alignment:
| Q |
151 |
attgtttcaagcacagctcgatcaattgcttgaaagagataattttttgccttcaaatccttcagcttc |
219 |
Q |
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| T |
11847771 |
attgtttcaagcacatcacgagaaattgcttgaaaaaggtaatttttggccttcaagtccatcaacttc |
11847703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 60 - 242
Target Start/End: Complemental strand, 518486 - 518305
Alignment:
| Q |
60 |
ggcctgaagctgtgctctcttcactctagcagtcccttggtatttcttctttaaagaatcccaaatctccttcgacgtccccttattcagaattgtttca |
159 |
Q |
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| T |
518486 |
ggcctgaagctgtgctcgcttccctctagcagtgacttggtattactttttcaaggaa--cctgatctccttcgatgtctcgttttttaaaattgtttca |
518389 |
T |
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| Q |
160 |
agcacagctcgatcaattgcttgaaagagataattttttgcctt-caaatccttcagcttcaactcctccaatgttttcttctc |
242 |
Q |
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|||||| |||||||||||||||||||||| | |||||||||||| ||||| | || ||| | ||| ||||||||||||||||| |
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| T |
518388 |
agcacaactcgatcaattgcttgaaagaggtgattttttgccttaaaaatcttacaactttagctcatccaatgttttcttctc |
518305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 60 - 242
Target Start/End: Original strand, 367175 - 367356
Alignment:
| Q |
60 |
ggcctgaagctgtgctctcttcactctagcagtcccttggtatttcttctttaaagaatcccaaatctccttcgacgtccccttattcagaattgtttca |
159 |
Q |
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||||||||| || |||| |||| |||||||||| ||||||||| ||| || || ||| || ||||||||||| ||| | || || | |||| ||||| |
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| T |
367175 |
ggcctgaagttgagctcgcttccctctagcagtgacttggtattactttttcaaggaa--cctgatctccttcgatgtctcgttttttaaaattatttca |
367272 |
T |
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| Q |
160 |
agcacagctcgatcaattgcttgaaagagataattttttgcctt-caaatccttcagcttcaactcctccaatgttttcttctc |
242 |
Q |
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| T |
367273 |
agcacaactcgatcaattgcttgaaagaggtgactttttgccttaaaaatcttacaactttagctcatccaatgttttcttctc |
367356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 221
Target Start/End: Complemental strand, 14864521 - 14864448
Alignment:
| Q |
148 |
agaattgtttcaagcacagctcgatcaattgcttgaaagagataattttttgccttcaaatccttcagcttcaa |
221 |
Q |
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||||| ||||| || ||| ||||||||||||||||| | | |||||| |||||||| | ||||||||||||||| |
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| T |
14864521 |
agaatggtttcgagaacaactcgatcaattgcttgatacaaataattctttgcctttagatccttcagcttcaa |
14864448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 203
Target Start/End: Complemental strand, 26545396 - 26545341
Alignment:
| Q |
148 |
agaattgtttcaagcacagctcgatcaattgcttgaaagagataattttttgcctt |
203 |
Q |
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|||||||||||||||||| | ||| ||||||||||||||| |||||||||||||| |
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| T |
26545396 |
agaattgtttcaagcacatcacgagaaattgcttgaaagaggtaattttttgcctt |
26545341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 15592637 - 15592569
Alignment:
| Q |
151 |
attgtttcaagcacagctcgatcaattgcttgaaagagataattttttgccttcaaatccttcagcttc |
219 |
Q |
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||||||||||||||| | ||| |||||||||||| || |||||||| |||||||| ||| ||| |||| |
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| T |
15592637 |
attgtttcaagcacatcacgagaaattgcttgaaaaaggtaatttttggccttcaagtccatcaacttc |
15592569 |
T |
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