View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_14 (Length: 574)
Name: NF20665_low_14
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 358; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 52 - 560
Target Start/End: Complemental strand, 30935454 - 30934948
Alignment:
| Q |
52 |
ggcaatggggtgggatctctgtatgtgttgctgcttcactagcacttctgacatatttccaaagcagaataaattgaattggcaaatcttcccctatgag |
151 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30935454 |
ggcaatggggtgggatctctgtatgtgctgctgcttcactagcacttctgacatatttccaaagcagaataaattgaagtggcaaatcttcccctatgag |
30935355 |
T |
|
| Q |
152 |
caacttagaaaagccacaaattattttgatgaagctcacattcttgaaaagaaaagctctgccactatatattatggtaagaagtctttcacctgaaaaa |
251 |
Q |
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| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
30935354 |
ctacttaggaaagccacaaattattttgatgaagctcacattcttgaaaagaaaggctctgccactatatattatggtaagcggtcttttacctgaaaaa |
30935255 |
T |
|
| Q |
252 |
atgaatgaatgaacagacgagataatctctgaatttgtaactatcgttctatttagtctttgaattttttgaaagatcacaatagacgttgggtttattt |
351 |
Q |
| |
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| |||||||||| |||| ||||| ||||||||||||||| |||||||| ||||||||||||||||||| | ||||||||| ||||| |||||||||||| |
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| T |
30935254 |
a--aatgaatgaatagacaagatagtctctgaatttgtaaatatcgttcaatttagtctttgaatttttcgtaagatcacagtagactttgggtttattt |
30935157 |
T |
|
| Q |
352 |
tgcgttattcagtttcatctatccgttaacttcaaacgttatctatggtgatgtgtgatgttgaataatgacatgacagtgtacgtgggtttctaatccc |
451 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||| || |||||||||||||||||||||||||| |||||| |
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| T |
30935156 |
tgcgttatttggtttcatctatccgttaacttcaaacgttatttatggtgatgtgcgatgttaaacgatgacatgacagtgtacgtgggtttcaaatccc |
30935057 |
T |
|
| Q |
452 |
ctttagattgaatctttggataatgagttgaaaatgttgaagtatttgattggaatcatgtgtatgtttgaaatatttagccaattgttgtagcttggta |
551 |
Q |
| |
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|| | ||||||||||| || ||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
30935056 |
gttcacattgaatcttttgagaatgaattgaaaatgtggaagtatttgattggaatcatgtgtatgtttgaaatctttaaccaattgttgtagcttggta |
30934957 |
T |
|
| Q |
552 |
ggtgtgttt |
560 |
Q |
| |
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|| |||||| |
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| T |
30934956 |
ggcgtgttt |
30934948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 55 - 308
Target Start/End: Complemental strand, 30994360 - 30994106
Alignment:
| Q |
55 |
aatggggtgggatctctgtatgtgttgctgcttcactagcacttctgacatatttccaaagcagaataaattgaattggcaaatcttcccctatgagcaa |
154 |
Q |
| |
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|||| |||||||| |||||||||||||||||||||||||||| ||||| | |||||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
30994360 |
aatgaggtgggatatctgtatgtgttgctgcttcactagcacatctgaaacatttccaaagcagagtaaattgaattggcaaatcttcccatatgagcaa |
30994261 |
T |
|
| Q |
155 |
cttagaaaagccacaaattattttgatgaagctcacattcttgaaaagaaaagctctgccactatatattatggtaagaagtctttcacctga-aaaaat |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||| |||||||||||||||||| ||| |||||| ||||| |
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| T |
30994260 |
cttagaaaagccacaaattattttgatgaagctcacattcttgataagaaaggctcgcccactgtatattatggtaagaagtgttttacctgataaaaaa |
30994161 |
T |
|
| Q |
254 |
gaatgaatgaacagacgagataatctctgaatttgtaactatcgttctatttagt |
308 |
Q |
| |
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||| |||| ||| | || ||||||| |||||||||||||||| ||||||| |
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| T |
30994160 |
ctttgagtgaatagaaaatttagtctctgagtttgtaactatcgttcaatttagt |
30994106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 362 - 560
Target Start/End: Complemental strand, 30994081 - 30993884
Alignment:
| Q |
362 |
agtttcatctatccgttaacttcaaacgttatctatggtgatgtgtgatgttgaataatgacatgacagtgtacgtgggtttctaatcccctttagattg |
461 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||| ||| ||| ||||| |||||| | ||| |||| |||||||||| |||| |||||| |||| |
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| T |
30994081 |
agtttcatctctccgttaacttcaaacgttatctatgatgacgtgaaatgtt-aataatcatatggcagtcgacgtgggttttaaatcacctttatattg |
30993983 |
T |
|
| Q |
462 |
aatctttgga-taatgagttgaaaatgttgaagtatttgattggaatcatgtgtatgtttgaaatatttagccaattgttgtagcttggtaggtgtgttt |
560 |
Q |
| |
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||||||| || || ||| | ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
30993982 |
aatctttagagtattga-tagaaaatgttgaggtatttgattggaatcatgtgtatgtttgaaatcattagccaattgttgtagcttgctaggtgtgttt |
30993884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 161 - 321
Target Start/End: Complemental strand, 30965507 - 30965348
Alignment:
| Q |
161 |
aaagccacaaattattttgatgaagctcacattcttgaaaagaaaagctctgccactatatattatggtaagaagtctttcacctgaaaaaatgaatgaa |
260 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||||||| | |||| |||||| |||||||||||||||||||||| || |||||||| ||| |
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| T |
30965507 |
aaagccacatattattttgatcaagctcacattcttgaaaagagaggctcggccactgtatattatggtaagaagtcttttacatgaaaaaa-atttgag |
30965409 |
T |
|
| Q |
261 |
tgaacagacgagataatctctgaatttgtaactatcgttctatttagtctttgaatttttt |
321 |
Q |
| |
|
|||| ||| | || ||||||||||||||||||| | || ||||||| | |||||||||| |
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|
| T |
30965408 |
tgaatagaaaatttagtctctgaatttgtaactattggtcaatttagtttctgaatttttt |
30965348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 116
Target Start/End: Complemental strand, 30965564 - 30965503
Alignment:
| Q |
55 |
aatggggtgggatctctgtatgtgttgctgcttcactagcacttctgacatatttccaaagc |
116 |
Q |
| |
|
|||| |||| ||||||| |||||| ||||||||||||||||||||||| | ||||||||||| |
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| T |
30965564 |
aatgaggtgagatctctctatgtgctgctgcttcactagcacttctgaaacatttccaaagc |
30965503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 479 - 531
Target Start/End: Complemental strand, 25048662 - 25048610
Alignment:
| Q |
479 |
ttgaaaatgttgaagtatttgattggaatcatgtgtatgtttgaaatatttag |
531 |
Q |
| |
|
|||||||||||||||||||| |||| ||| ||||||||||||||||| ||||| |
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|
| T |
25048662 |
ttgaaaatgttgaagtatttcattgaaattatgtgtatgtttgaaatttttag |
25048610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 362 - 499
Target Start/End: Complemental strand, 30965336 - 30965201
Alignment:
| Q |
362 |
agtttcatctatccgttaacttcaaacgttatctatggtgatgtgtgatgttgaataatgacatgacagtgtacgtgggtttctaatcccctttagattg |
461 |
Q |
| |
|
|||||||||| |||| ||||||||| ||||||||||| ||| ||| ||||| |||| | |||||| ||| |||||||||| |||| |||||| |||| |
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| T |
30965336 |
agtttcatctctccgataacttcaagcgttatctatgatgacgtgcaatgtt-aatattcacatgatagtcgacgtgggttttaaatcacctttacattg |
30965238 |
T |
|
| Q |
462 |
aatctttggataatgagttgaaaatgttgaagtatttg |
499 |
Q |
| |
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|| |||| || |||| | ||||||||||| ||||||| |
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|
| T |
30965237 |
aacctttaga-gatgaatagaaaatgttgaggtatttg |
30965201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 488 - 547
Target Start/End: Complemental strand, 33927081 - 33927021
Alignment:
| Q |
488 |
ttgaagtatttgattggaatcatgtgtat-gtttgaaatatttagccaattgttgtagctt |
547 |
Q |
| |
|
|||||||||||||||||||||||||||| || | | || |||||||||||||||| |||| |
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|
| T |
33927081 |
ttgaagtatttgattggaatcatgtgtaacgtattagatctttagccaattgttgtggctt |
33927021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 472 - 560
Target Start/End: Complemental strand, 41147738 - 41147650
Alignment:
| Q |
472 |
taatgagttgaaaatgttgaagtatttgattggaatcatgtgtatgtttgaaatatttagccaattgttgtagcttggtaggtgtgttt |
560 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
41147738 |
taatgaattgaaaatgttgaagtgtttgattggaattatgtgtatgtttgaaatcttttaccaattgttgtagcttggtaggtgtgttt |
41147650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 531
Target Start/End: Original strand, 33485851 - 33485888
Alignment:
| Q |
494 |
tatttgattggaatcatgtgtatgtttgaaatatttag |
531 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||| |
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|
| T |
33485851 |
tatttgattggaattatgtgtatgtttgaaatctttag |
33485888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 459 - 503
Target Start/End: Original strand, 40006930 - 40006974
Alignment:
| Q |
459 |
ttgaatctttggataatgagttgaaaatgttgaagtatttgattg |
503 |
Q |
| |
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|||||| ||| |||||||| ||||||||||||| ||||||||||| |
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| T |
40006930 |
ttgaatttttagataatgaattgaaaatgttgaggtatttgattg |
40006974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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