View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20665_low_143 (Length: 250)
Name: NF20665_low_143
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_143 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 6093759 - 6093518
Alignment:
| Q |
1 |
ttatgttttcaagacttcgtaaggtttttctatatggtgtgatctgagtgcctttgaccggacgactttaactttttaggcgtgtgattaggctttttaa |
100 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||| ||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6093759 |
ttatgctttcaagacttcgtaaggttttcctatatggtgtgatatgagtgcctttgactggatgactttaactttttaggcatgtgattaggctttttaa |
6093660 |
T |
|
| Q |
101 |
ctgttgatttatgcatataaacattgaccatctggttgtgtaattcttaaagatacattttatgatggatcaatgctt-aaagtttatcattttaaaatt |
199 |
Q |
| |
|
|| |||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
6093659 |
ctattgatttatgcatataaacattgatcatttgggtgtgtaattcttaaagatacattttatgatggatcaatgcttaaaaatttatcattttaaaatt |
6093560 |
T |
|
| Q |
200 |
aattttatca-tgcattttgtcacccaattgattcgcctatg |
240 |
Q |
| |
|
|| ||||| | ||||| |||||||||||||||| ||||||| |
|
|
| T |
6093559 |
aactttatgagtgcataatgtcacccaattgattagcctatg |
6093518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 7 - 151
Target Start/End: Original strand, 16485717 - 16485861
Alignment:
| Q |
7 |
tttcaagacttcgtaaggtttttctatatggtgtgatctgagtgcctttgaccggacgactttaactttttaggcgtgtgattaggctttttaactgttg |
106 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||||| |||||||||||| ||| ||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
16485717 |
tttcaagacttcataaggttttcctatatggtgtgatctcagtgcctttgactggagtactttaactttttaggcatgtgattaggctttttaactattg |
16485816 |
T |
|
| Q |
107 |
atttatgcatataaacattgaccatctggttgtgtaattcttaaa |
151 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
16485817 |
atttatgcatataaacattgatcatctgagtgtgtaattcttaaa |
16485861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 7 - 151
Target Start/End: Complemental strand, 21817193 - 21817049
Alignment:
| Q |
7 |
tttcaagacttcgtaaggtttttctatatggtgtgatctgagtgcctttgaccggacgactttaactttttaggcgtgtgattaggctttttaactgttg |
106 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||||| |||||||||||| ||| ||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
21817193 |
tttcaagacttcataaggttttcctatatggtgtgatctcagtgcctttgactggagtactttaactttttaggcatgtgattaggctttttaactattg |
21817094 |
T |
|
| Q |
107 |
atttatgcatataaacattgaccatctggttgtgtaattcttaaa |
151 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
21817093 |
atttatgcatataaacattgatcatctgagtgtgtaattcttaaa |
21817049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 7 - 170
Target Start/End: Original strand, 31895204 - 31895367
Alignment:
| Q |
7 |
tttcaagacttcgtaaggtttttctatatggtgtgatctgagtgcctttgaccggacgactttaactttttaggcgtgtgattaggctttttaactgttg |
106 |
Q |
| |
|
|||||||||||| ||||||||||||| |||| ||||||| |||||||||||| || ||||||||||||||||| |||||||||| | ||||||| ||| |
|
|
| T |
31895204 |
tttcaagacttcataaggtttttctacatggggtgatctcagtgcctttgactagagtactttaactttttaggcatgtgattagggtgtttaactattg |
31895303 |
T |
|
| Q |
107 |
atttatgcatataaacattgaccatctggttgtgtaattcttaaagatacattttatgatggat |
170 |
Q |
| |
|
||||||||||||||||||||| ||| || |||||||||||||||||| |||||||||||||| |
|
|
| T |
31895304 |
atttatgcatataaacattgatcatttgagagtgtaattcttaaagatatattttatgatggat |
31895367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 15959019 - 15959086
Alignment:
| Q |
67 |
tttaactttttaggcgtgtgattaggctttttaactgttgatttatgcatataaacattgaccatctg |
134 |
Q |
| |
|
||||||||| ||||| |||||||| ||||||||||| || |||| |||||||||||||||| |||||| |
|
|
| T |
15959019 |
tttaactttgtaggcatgtgattaagctttttaactattaatttgtgcatataaacattgatcatctg |
15959086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University