View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20665_low_145 (Length: 249)
Name: NF20665_low_145
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_145 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 13372971 - 13372740
Alignment:
| Q |
1 |
ctatatatgaaatcagttataaacttctaacactgttcattatgttataggctgtaatggacacccttgatggtattattgacactgtttcagcactcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
13372971 |
ctatatatgaaatcagttataaacttctaacactgttcattatgttataggctgtaatgggcacctttgatggtattattgacactgtttcagcactcca |
13372872 |
T |
|
| Q |
101 |
tccactaatgcccttgatgggtttattgaagaatcatggtaaacttgttatggttggagctccagaaaagcctttggagcttcctgcattttctttaatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
13372871 |
tccactaatgcccttgatgggtttattgaagaatcatggtaaacttgttatggttggagctccagagaagcctttggagcttcctgcattttctttaatt |
13372772 |
T |
|
| Q |
201 |
ggaggtaagcatatagaaaacaatgtcattat |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
13372771 |
ggaggtaagcatatagaaaacaatgtcattat |
13372740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 34 - 214
Target Start/End: Complemental strand, 13378693 - 13378513
Alignment:
| Q |
34 |
tgttcattatgttataggctgtaatggacacccttgatggtattattgacactgtttcagcactccatccactaatgcccttgatgggtttattgaagaa |
133 |
Q |
| |
|
|||||| |||||||||||||||||||| || ||||||| || || ||||||||||||||||||||||| |||||||| ||| | ||| |||||||||| |
|
|
| T |
13378693 |
tgttcaatatgttataggctgtaatgggaacgtttgatggaatcatcgacactgtttcagcactccatcctctaatgcctttgcttggtctattgaagaa |
13378594 |
T |
|
| Q |
134 |
tcatggtaaacttgttatggttggagctccagaaaagcctttggagcttcctgcattttctttaattggaggtaagcatat |
214 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| |||||||||||| |||| | ||||||||| |||| ||||||||||| |
|
|
| T |
13378593 |
taatggtaaacttgttatggttggagctccagagaagcctttggagtttccagtattttctttgattgtgggtaagcatat |
13378513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 13419055 - 13419008
Alignment:
| Q |
167 |
aaagcctttggagcttcctgcattttctttaattggaggtaagcatat |
214 |
Q |
| |
|
||||||| | |||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
13419055 |
aaagcctctagagcttcctgtattttctttacttggaggtaagcatat |
13419008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 13425945 - 13425898
Alignment:
| Q |
167 |
aaagcctttggagcttcctgcattttctttaattggaggtaagcatat |
214 |
Q |
| |
|
||||||| | |||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
13425945 |
aaagcctctagagcttcctgtattttctttacttggaggtaagcatat |
13425898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University