View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_146 (Length: 249)
Name: NF20665_low_146
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_146 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 45090721 - 45090469
Alignment:
| Q |
16 |
cagttaaatcatagtacatggttccgtaagtttcagtgtaacaggataaatctatattttgcacttttgaggtatcagaaagaacggattgaattgtaac |
115 |
Q |
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| T |
45090721 |
cagttaaatcatagtacatggttcagtaagtttcagtgtaacaggataaatctatattttgcaattttgaggtatcagaaagaacggattgaattgtaac |
45090622 |
T |
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| Q |
116 |
ataaaagtttacattgtaaaatgaaataaagagcagtaactatgctcaagttattaaaagacaaatacgaacagaacattctga---------------- |
199 |
Q |
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| T |
45090621 |
ataaaagtttacattgtaaaatgaaataaagagcagtaactatgctcaagttattaaaagagaaataagaacagaacattctgaaagtggttataaacca |
45090522 |
T |
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| Q |
200 |
---aatttttgtggggcttatctcaaatatagaggaatgtatttcttaggatc |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45090521 |
aacaatttttgtggggcttatctcaaatatagaggaatgtatttcttaggatc |
45090469 |
T |
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