View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_153 (Length: 248)
Name: NF20665_low_153
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_153 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 11034306 - 11034537
Alignment:
| Q |
1 |
gtgttaattagtagcactcactctaacaaatgggtgtggaagatcgatgtaattgtaaataaaagaaaattaagcaaccaacttgaaaaaatagagtatc |
100 |
Q |
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| T |
11034306 |
gtgttaattagtagcactcactctaacaaatgggtgtggaagatcgatgtaattgtaaataaaagaaaattaagcaaccaacttgaaaaaatagagtatc |
11034405 |
T |
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| Q |
101 |
taaagcgcagaattgcatatataccaaccataattacagtgagcctggttattttgatcgagctccgcatacgcatatgaaacatctaatttacaaaaac |
200 |
Q |
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| T |
11034406 |
taaagagcagaattgcatatataccaaccataattacagtgagcctggttattttgatcgagctccgcatacgcatacgaaacatctaatttacaaaaac |
11034505 |
T |
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| Q |
201 |
tgttgagccaagaaagttcaaatccataaaac |
232 |
Q |
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| T |
11034506 |
tgttgagccaagaaagttcaaatccataaaac |
11034537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 11008910 - 11009085
Alignment:
| Q |
1 |
gtgttaattagtagcactcactctaacaaatgggtgtggaagatcgatgtaattgtaaataaaag-aaaattaagcaaccaacttg-aaaaaatagagta |
98 |
Q |
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| T |
11008910 |
gtgttatttagtagcactcactctaacaaatggatgtggaagatccacgcgattgtaaataatagaaaaattaagcatcgaaattgaaaaaaatagagta |
11009009 |
T |
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| Q |
99 |
tctaaagcgcagaattgc--atatataccaaccataattacagtgagcctggttattttgatcgagctccgcatac |
172 |
Q |
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| T |
11009010 |
tataaatcgcacaactgcatatatataccaaccatatttacagtgaggctggttatattgatcgagcactgcatac |
11009085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 10921628 - 10921669
Alignment:
| Q |
190 |
tttacaaaaactgttgagccaagaaagttcaaatccataaaa |
231 |
Q |
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| T |
10921628 |
tttacaaaaactgttgagccaagaaagttcaaatccataaaa |
10921669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 11003424 - 11003382
Alignment:
| Q |
190 |
tttacaaaaactgttgagccaagaaagttcaaatccataaaac |
232 |
Q |
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| T |
11003424 |
tttacaaagactattgagccatgaaagttcaaatccataaaac |
11003382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 229
Target Start/End: Original strand, 11009103 - 11009133
Alignment:
| Q |
199 |
actgttgagccaagaaagttcaaatccataa |
229 |
Q |
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| T |
11009103 |
actgttgagccaagaaagttcaaatccataa |
11009133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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