View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_155 (Length: 246)
Name: NF20665_low_155
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_155 |
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Alignment Details
Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 14 - 131
Target Start/End: Original strand, 34365483 - 34365600
Alignment:
| Q |
14 |
aattaattcaaaacacattgattattgactagctagtgtgattaggtaagactcgagaagaaattatatttatagtgcatggccaatagataaagtatac |
113 |
Q |
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| T |
34365483 |
aattaattcaaaccacattgattattgactagctagtgtgattaggtaagactcgaaaagaaattatatttatagtgcatggccaatagataaagtatac |
34365582 |
T |
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| Q |
114 |
accactatctcaaacttc |
131 |
Q |
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| T |
34365583 |
accactatctcaaacttc |
34365600 |
T |
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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 34365666 - 34365715
Alignment:
| Q |
197 |
cataatatatagtaccgtctcaccactttcttgcattttgccaactattc |
246 |
Q |
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| T |
34365666 |
cataatatatagtaccgtctcaccactttcttgcattttgccaactattc |
34365715 |
T |
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