View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20665_low_156 (Length: 245)

Name: NF20665_low_156
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20665_low_156
NF20665_low_156
[»] chr2 (26 HSPs)
chr2 (19-222)||(13487690-13487893)
chr2 (32-199)||(20061055-20061223)
chr2 (28-133)||(15079888-15079993)
chr2 (32-201)||(14275747-14275916)
chr2 (28-197)||(25626468-25626638)
chr2 (23-142)||(44068773-44068891)
chr2 (44-133)||(36285025-36285114)
chr2 (32-174)||(32294510-32294653)
chr2 (48-200)||(39420209-39420362)
chr2 (44-118)||(39364497-39364571)
chr2 (28-133)||(36528407-36528512)
chr2 (32-133)||(9950329-9950430)
chr2 (50-133)||(13349723-13349806)
chr2 (28-178)||(7061538-7061688)
chr2 (28-133)||(29877011-29877116)
chr2 (28-133)||(30549119-30549224)
chr2 (28-133)||(409959-410063)
chr2 (83-133)||(41890037-41890087)
chr2 (81-126)||(2290327-2290372)
chr2 (46-123)||(2889176-2889253)
chr2 (28-132)||(27465380-27465483)
chr2 (83-126)||(2319219-2319262)
chr2 (26-64)||(30354054-30354092)
chr2 (48-112)||(13242206-13242270)
chr2 (85-133)||(25777584-25777632)
chr2 (88-120)||(43451789-43451821)
[»] chr3 (18 HSPs)
chr3 (28-198)||(39430254-39430425)
chr3 (28-200)||(47006588-47006761)
chr3 (28-126)||(4539923-4540021)
chr3 (28-126)||(13637957-13638055)
chr3 (28-134)||(44418511-44418617)
chr3 (28-139)||(37919213-37919322)
chr3 (32-168)||(19961158-19961294)
chr3 (52-126)||(52859539-52859613)
chr3 (32-133)||(45628371-45628472)
chr3 (19-123)||(33791549-33791653)
chr3 (47-197)||(18029983-18030134)
chr3 (28-123)||(54787795-54787890)
chr3 (29-142)||(25101979-25102090)
chr3 (28-139)||(26040872-26040980)
chr3 (28-197)||(47849920-47850090)
chr3 (86-125)||(33466008-33466047)
chr3 (24-70)||(12789848-12789894)
chr3 (28-70)||(45054759-45054801)
[»] chr8 (22 HSPs)
chr8 (28-197)||(42685705-42685874)
chr8 (28-197)||(6530301-6530471)
chr8 (32-174)||(8867200-8867342)
chr8 (28-133)||(8114300-8114405)
chr8 (76-142)||(7774648-7774713)
chr8 (76-142)||(7791295-7791360)
chr8 (76-142)||(7811879-7811944)
chr8 (28-174)||(8768995-8769141)
chr8 (50-197)||(31313302-31313450)
chr8 (53-131)||(39491633-39491711)
chr8 (84-133)||(17920216-17920265)
chr8 (28-112)||(13933045-13933129)
chr8 (28-133)||(15067632-15067737)
chr8 (75-133)||(39699609-39699667)
chr8 (83-133)||(40505305-40505355)
chr8 (89-133)||(34576748-34576792)
chr8 (28-120)||(35865205-35865297)
chr8 (76-123)||(12703524-12703571)
chr8 (28-110)||(13949029-13949111)
chr8 (79-133)||(21574281-21574335)
chr8 (29-74)||(9034208-9034252)
chr8 (79-127)||(20668787-20668835)
[»] chr7 (16 HSPs)
chr7 (32-197)||(32786785-32786951)
chr7 (43-195)||(26080984-26081137)
chr7 (43-195)||(26104771-26104924)
chr7 (28-133)||(25119798-25119904)
chr7 (52-133)||(31054233-31054314)
chr7 (48-134)||(2033669-2033755)
chr7 (28-133)||(47390511-47390617)
chr7 (42-174)||(28337222-28337355)
chr7 (29-125)||(37929107-37929203)
chr7 (28-123)||(28324581-28324676)
chr7 (24-118)||(47990935-47991029)
chr7 (48-133)||(31399338-31399421)
chr7 (28-133)||(32546767-32546871)
chr7 (28-133)||(39837397-39837502)
chr7 (28-63)||(2741392-2741427)
chr7 (28-71)||(34963655-34963698)
[»] chr4 (27 HSPs)
chr4 (29-133)||(29508724-29508828)
chr4 (44-196)||(27918348-27918501)
chr4 (29-134)||(24940689-24940794)
chr4 (28-196)||(564107-564276)
chr4 (28-201)||(28675681-28675855)
chr4 (28-197)||(22019384-22019554)
chr4 (28-174)||(14138993-14139140)
chr4 (28-104)||(30033480-30033556)
chr4 (28-126)||(54997698-54997797)
chr4 (28-133)||(20537298-20537404)
chr4 (29-133)||(36989893-36989996)
chr4 (28-126)||(50297633-50297731)
chr4 (100-197)||(1961605-1961703)
chr4 (89-133)||(45249947-45249991)
chr4 (24-71)||(31861167-31861214)
chr4 (51-132)||(34936371-34936452)
chr4 (89-142)||(42051169-42051221)
chr4 (46-122)||(11397525-11397601)
chr4 (46-122)||(11407252-11407328)
chr4 (73-133)||(24744008-24744068)
chr4 (84-123)||(1008948-1008987)
chr4 (28-95)||(36937128-36937195)
chr4 (50-133)||(39233184-39233266)
chr4 (99-134)||(39260056-39260091)
chr4 (31-133)||(40311677-40311779)
chr4 (31-133)||(40321753-40321855)
chr4 (75-120)||(54719665-54719710)
[»] chr6 (13 HSPs)
chr6 (28-197)||(3787423-3787593)
chr6 (49-142)||(1065640-1065732)
chr6 (83-195)||(30249141-30249254)
chr6 (62-133)||(8504528-8504599)
chr6 (51-133)||(5849979-5850061)
chr6 (44-133)||(6469562-6469651)
chr6 (84-126)||(20087216-20087258)
chr6 (84-126)||(20128959-20129001)
chr6 (84-126)||(22203869-22203911)
chr6 (88-126)||(29286036-29286074)
chr6 (89-126)||(2831425-2831462)
chr6 (48-125)||(11659323-11659400)
chr6 (97-133)||(2614366-2614402)
[»] chr1 (21 HSPs)
chr1 (32-133)||(31635501-31635602)
chr1 (46-195)||(1035565-1035715)
chr1 (50-126)||(26176327-26176403)
chr1 (50-138)||(31262615-31262702)
chr1 (47-174)||(11017957-11018085)
chr1 (19-117)||(41884606-41884704)
chr1 (31-133)||(42066684-42066781)
chr1 (28-133)||(4084758-4084863)
chr1 (44-117)||(16394901-16394974)
chr1 (44-200)||(28490511-28490667)
chr1 (52-133)||(4658732-4658813)
chr1 (48-133)||(5799755-5799840)
chr1 (29-126)||(40030666-40030762)
chr1 (29-118)||(25366810-25366899)
chr1 (84-120)||(14758782-14758818)
chr1 (78-133)||(3895967-3896022)
chr1 (31-133)||(16583215-16583317)
chr1 (103-133)||(29033009-29033039)
chr1 (76-142)||(37316619-37316683)
chr1 (24-60)||(11248590-11248626)
chr1 (89-133)||(11420873-11420917)
[»] chr5 (16 HSPs)
chr5 (53-170)||(10523677-10523795)
chr5 (32-126)||(40044801-40044895)
chr5 (28-126)||(10197053-10197158)
chr5 (28-126)||(554284-554382)
chr5 (83-134)||(43340338-43340389)
chr5 (66-128)||(4164399-4164461)
chr5 (28-134)||(26105068-26105174)
chr5 (28-112)||(12212181-12212265)
chr5 (48-131)||(24519417-24519499)
chr5 (75-133)||(16627302-16627360)
chr5 (75-123)||(7738342-7738390)
chr5 (88-181)||(41144637-41144731)
chr5 (28-134)||(41063908-41064014)
chr5 (30-71)||(10431542-10431583)
chr5 (28-112)||(29557553-29557637)
chr5 (28-60)||(43340559-43340591)
[»] scaffold0127 (1 HSPs)
scaffold0127 (43-133)||(13055-13145)
[»] scaffold0482 (1 HSPs)
scaffold0482 (76-142)||(553-618)
[»] scaffold0328 (1 HSPs)
scaffold0328 (83-168)||(12431-12517)
[»] scaffold0116 (1 HSPs)
scaffold0116 (32-142)||(2959-3071)
[»] scaffold0542 (1 HSPs)
scaffold0542 (28-126)||(4582-4679)
[»] scaffold0087 (1 HSPs)
scaffold0087 (42-98)||(8471-8527)


Alignment Details
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 13487690 - 13487893
Alignment:
Q  19 ttatcggtaatgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagtt 118  Q
    |||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13487690 ttattggtaatgttaacttgtgttctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagtt 13487789  T
Q  119 gaatgcacaactttttgatacatacttctataattagttcttcaacatgtgcccttaaggacaaaaattagcatttgccataaattatttgtattagatt 218  Q
     |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||    
T  13487790 aaatgcacaactttttgatacgtacttctataattagttctttaacatgtgcccttaaggacaaaaattagcatttgtcataaattatttgtattaaatt 13487889  T
Q  219 caac 222  Q
    ||||    
T  13487890 caac 13487893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 32 - 199
Target Start/End: Original strand, 20061055 - 20061223
Alignment:
Q  32 taacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaactt 131  Q
    ||||||||  ||| ||||||||||||||| |||  ||||| | ||| ||| |||||||||||||||||| | |||||||||||||||||||||||||| |    
T  20061055 taacttgttcccttagggcacatgttaagcaacctaaaaagagcaactttgcattgaaaaacataatatgtcaacttttaagaagttgaatgcacaac-t 20061153  T
Q  132 tttgatac--atacttctataattagttcttcaacatgtgcccttaaggacaaaaattagcatttgccat 199  Q
    ||||||||  ||| ||||||||| ||||| | | ||||||||||| ||| || || ||| ||||||||||    
T  20061154 tttgatacgtatatttctataatgagttccttagcatgtgcccttgagggcacaagttaacatttgccat 20061223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 15079993 - 15079888
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcaca 127  Q
    |||||||||||| |||||||| ||| ||||||| |||  ||||| | |||||||||||||||||| || ||| ||||||||||||||||||||||||||     
T  15079993 atgttaacttgtgtcctaaggacacgtgttaagaaacctaaaaagagcaattttacattgaaaaatatgatagtttaacttttaagaagttgaatgcacg 15079894  T
Q  128 actttt 133  Q
    ||||||    
T  15079893 actttt 15079888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 32 - 201
Target Start/End: Complemental strand, 14275916 - 14275747
Alignment:
Q  32 taacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaactt 131  Q
    ||||||||  ||||| ||||||| ||||| ||| |||||| | ||||||| ||||| |||||||||||| ||||||||||||||||||||||||  || |    
T  14275916 taacttgttccctaaaggcacatattaagcaacccaaaaagagcaattttgcattggaaaacataatatattaacttttaagaagttgaatgcatgac-t 14275818  T
Q  132 tttgatac--atacttctataattagttcttcaacatgtgcccttaaggacaaaaattagcatttgccataa 201  Q
    ||||||||  ||| ||||||||| ||||| | || ||||||||||  || || || ||||||||||||||||    
T  14275817 tttgatacgtatatttctataatgagttccttaatatgtgccctt-ggggcacaagttagcatttgccataa 14275747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 28 - 197
Target Start/End: Complemental strand, 25626638 - 25626468
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcaca 127  Q
    ||||||||||||  |||||||||||||||||||||||  ||||  ||||| |||  |||| ||||||| ||| |||||||||||||||||||| | |||     
T  25626638 atgttaacttgtgccctaagggcacatgttaaggaacctaaaatgaacaactttgaattggaaaacatgataatttaacttttaagaagttgactacacg 25626539  T
Q  128 actttttgatac--atacttctataattagttcttcaacatgtgcccttaaggacaaaaattagcatttgcc 197  Q
    || |||||||||  ||| ||| ||||| ||||||| ||||||||| ||| ||| || || ||||||||||||    
T  25626538 ac-ttttgatacgtatatttcaataataagttctttaacatgtgctcttgagggcacaagttagcatttgcc 25626468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 23 - 142
Target Start/End: Original strand, 44068773 - 44068891
Alignment:
Q  23 cggtaatgttaacttgtatcctaagggcacatgttaaggaactcaaaaat-aacaattttacattgaaaaacataatattttaacttttaagaagttgaa 121  Q
    |||| ||||||||||||  |||||||||||||||||||||| || ||||| ||||| ||| ||||||||||||| ||| ||||||||||||||||||||     
T  44068773 cggtcatgttaacttgtgccctaagggcacatgttaaggaa-tctaaaatgaacaactttgcattgaaaaacatgataatttaacttttaagaagttgat 44068871  T
Q  122 tgcacaactttttgatacata 142  Q
    ||||| || ||||||||||||    
T  44068872 tgcacgac-ttttgatacata 44068891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 36285114 - 36285025
Alignment:
Q  44 taagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaactttt 133  Q
    ||||||||||||||||  |||  ||||| | ||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  36285114 taagggcacatgttaaacaacataaaaagagcaattttgcattgaaaaaaataatattttaacttttaagaagttgaatgtacaactttt 36285025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 174
Target Start/End: Original strand, 32294510 - 32294653
Alignment:
Q  32 taacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaactt 131  Q
    ||||||||  ||||| |||||||||||| ||||  ||||| | ||| ||||||||| ||||||||||| ||| |||||| ||||||||||||||| || |    
T  32294510 taacttgtgccctaaaggcacatgttaaagaacctaaaaagagcaaatttacattggaaaacataatagtttgacttttcagaagttgaatgcacgac-t 32294608  T
Q  132 tttgatac--atacttctataattagttcttcaacatgtgccctt 174  Q
    ||| ||||  ||| ||||||||| ||||| | |||||||||||||    
T  32294609 tttaatacatatatttctataatgagttccttaacatgtgccctt 32294653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 48 - 200
Target Start/End: Original strand, 39420209 - 39420362
Alignment:
Q  48 ggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaac-tttttgatacatacttc 146  Q
    |||||||||||||||||  ||||| | ||| ||| ||||| ||||||||||||||||||||| |||||||||||||||| || |||   ||  ||| |||    
T  39420209 ggcacatgttaaggaacctaaaaagagcaactttgcattggaaaacataatattttaactttcaagaagttgaatgcacgacatttaatatgtatatttc 39420308  T
Q  147 tataattagttcttcaacatgtgcccttaaggacaaaaattagcatttgccata 200  Q
    |||||| ||||| | ||||||||||||| ||   | || |||||||||||||||    
T  39420309 tataatgagttccttaacatgtgcccttgagcgaacaagttagcatttgccata 39420362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 44 - 118
Target Start/End: Complemental strand, 39364571 - 39364497
Alignment:
Q  44 taagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagtt 118  Q
    ||||||||| |||||| |||| |||||||||||| ||| ||||| |||||||||||||||||||||| |||||||    
T  39364571 taagggcacgtgttaatgaacccaaaaataacaactttgcattggaaaacataatattttaactttttagaagtt 39364497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 36528512 - 36528407
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcaca 127  Q
    |||||||||||| |||| |||| |||||||||| |||| ||||| | ||  ||| ||||| ||||||||| || | |||||||||||||||||||||||     
T  36528512 atgttaacttgtgtccttagggtacatgttaagcaacttaaaaagagcagctttgcattggaaaacataacatgtcaacttttaagaagttgaatgcacg 36528413  T
Q  128 actttt 133  Q
    ||||||    
T  36528412 actttt 36528407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 133
Target Start/End: Complemental strand, 9950430 - 9950329
Alignment:
Q  32 taacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaactt 131  Q
    |||||||| | ||||||||||||||||| |||| | |||| |  || ||| ||||| |||||||||||||||||||||| | ||||||| ||||| ||||    
T  9950430 taacttgtgttctaagggcacatgttaaagaacccgaaaagaggaactttgcattggaaaacataatattttaactttttaaaagttgactgcacgactt 9950331  T
Q  132 tt 133  Q
    ||    
T  9950330 tt 9950329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 133
Target Start/End: Complemental strand, 13349806 - 13349723
Alignment:
Q  50 cacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaactttt 133  Q
    ||||| |||||||||| | ||| ||||| |||| ||||||||| ||||||||||||||||||| || ||||||| || ||||||    
T  13349806 cacatattaaggaacttagaaaaaacaactttatattgaaaaatataatattttaacttttaaaaaattgaatgtacgactttt 13349723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 178
Target Start/End: Complemental strand, 7061688 - 7061538
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcaca 127  Q
    |||||||| |||  ||||| |||| |||||||||||| |||||| | ||| ||| ||||||||  ||| |||||||||||||| ||||||| | | |||     
T  7061688 atgttaacgtgtgccctaacggcatatgttaaggaacccaaaaa-agcaactttccattgaaatccatgatattttaactttttagaagtttattacacg 7061590  T
Q  128 actttttgat--acatacttctataattagttcttcaacatgtgcccttaagg 178  Q
    || |||||||  | ||| ||||||||| ||||||| ||||||||| |||||||    
T  7061589 ac-ttttgatgcatatatttctataataagttctttaacatgtgctcttaagg 7061538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 29877011 - 29877116
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcaca 127  Q
    |||||||||||| | ||||||| |||||||||| || | ||||  | ||||||| |||||||||| || ||| |||||||||| |||| |||| |||||     
T  29877011 atgttaacttgtgttctaagggtacatgttaagaaatttaaaataagcaattttgcattgaaaaatattataatttaacttttgagaaattgactgcacg 29877110  T
Q  128 actttt 133  Q
    ||||||    
T  29877111 actttt 29877116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 30549224 - 30549119
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcaca 127  Q
    ||||||||||||   |||| || ||||||||||||||| ||||  | ||| ||| |||| |||||||| ||| |||||| ||||||||||||| |||||     
T  30549224 atgttaacttgtgctctaaaggaacatgttaaggaacttaaaatgagcaaatttgcattaaaaaacatgataatttaacgtttaagaagttgattgcacg 30549125  T
Q  128 actttt 133  Q
    ||||||    
T  30549124 actttt 30549119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 410063 - 409959
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaaataa-caattttacattgaaaaacataatattttaacttttaagaagttgaatgcac 126  Q
    ||||||||||||  ||||||||||||||||||||||| | ||||||| ||| ||| ||||  |||||||  || |||||||||| ||||||||| |||||    
T  410063 atgttaacttgtgccctaagggcacatgttaaggaac-ctaaaataagcaactttgcatt-caaaacatcgtaatttaacttttgagaagttgactgcac 409966  T
Q  127 aactttt 133  Q
     ||||||    
T  409965 gactttt 409959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 133
Target Start/End: Original strand, 41890037 - 41890087
Alignment:
Q  83 cattgaaaaacataatattttaacttttaagaagttgaatgcacaactttt 133  Q
    ||||| ||||||||| ||||||| |||||||||||||||||||| ||||||    
T  41890037 cattggaaaacataacattttaatttttaagaagttgaatgcacgactttt 41890087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 126
Target Start/End: Complemental strand, 2290372 - 2290327
Alignment:
Q  81 tacattgaaaaacataatattttaacttttaagaagttgaatgcac 126  Q
    |||||||||||||||||||||||||||  ||||||||| |||||||    
T  2290372 tacattgaaaaacataatattttaactagtaagaagttaaatgcac 2290327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 123
Target Start/End: Complemental strand, 2889253 - 2889176
Alignment:
Q  46 agggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatg 123  Q
    |||||||||||||||||| | ||||| |  ||||||  ||||||||| || | ||||| |||||||||||||||||||    
T  2889253 agggcacatgttaaggaatttaaaaagaggaattttgtattgaaaaatatgaaattttgacttttaagaagttgaatg 2889176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 132
Target Start/End: Complemental strand, 27465483 - 27465380
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcaca 127  Q
    |||||||||||| || ||||  ||||| |||| ||| | ||||| ||||| |||  ||||||||| | |||||||||||||||||||| ||||||| ||     
T  27465483 atgttaacttgtgtcataaga-cacatattaaagaatttaaaaaaaacaactttgtattgaaaaataaaatattttaacttttaagaatttgaatgtacg 27465385  T
Q  128 acttt 132  Q
    |||||    
T  27465384 acttt 27465380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 126
Target Start/End: Complemental strand, 2319262 - 2319219
Alignment:
Q  83 cattgaaaaacataatattttaacttttaagaagttgaatgcac 126  Q
    |||||||||||||||||||||||||  ||||||||| |||||||    
T  2319262 cattgaaaaacataatattttaactactaagaagttaaatgcac 2319219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 64
Target Start/End: Complemental strand, 30354092 - 30354054
Alignment:
Q  26 taatgttaacttgtatcctaagggcacatgttaaggaac 64  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  30354092 taatgttaacttgtgtccttagggcacatgttaaggaac 30354054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 13242270 - 13242206
Alignment:
Q  48 ggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaa 112  Q
    |||||||||||| ||||| ||||| |  |||||| ||||| ||||||||| ||||||| ||||||    
T  13242270 ggcacatgttaaagaacttaaaaagagtaattttgcattggaaaacataacattttaaattttaa 13242206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 133
Target Start/End: Original strand, 25777584 - 25777632
Alignment:
Q  85 ttgaaaaacataatattttaacttttaagaagttgaatgcacaactttt 133  Q
    ||||||||||| ||| |||||||||||| || |||| ||||||||||||    
T  25777584 ttgaaaaacatgataatttaacttttaaaaaattgactgcacaactttt 25777632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 120
Target Start/End: Complemental strand, 43451821 - 43451789
Alignment:
Q  88 aaaaacataatattttaacttttaagaagttga 120  Q
    ||||| |||||||||||||||||||||||||||    
T  43451821 aaaaatataatattttaacttttaagaagttga 43451789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 28 - 198
Target Start/End: Complemental strand, 39430425 - 39430254
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcaca 127  Q
    |||||||||||| |||||||| || ||||||||||||||||||| | ||| ||| ||||| |||||||||||||||||||||| ||||||||| |||||     
T  39430425 atgttaacttgtgtcctaaggacatatgttaaggaactcaaaaagagcaactttgcattggaaaacataatattttaactttttagaagttgactgcacg 39430326  T
Q  128 actttttgatacata--cttctataattagttcttcaacatgtgcccttaaggacaaaaattagcatttgcca 198  Q
    || ||||||||||||   ||||||||| ||||||| || ||| |||||| ||| || || |||||||||||||    
T  39430325 ac-ttttgatacatatgtttctataatgagttctttaagatgcgcccttgagggcataagttagcatttgcca 39430254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 28 - 200
Target Start/End: Complemental strand, 47006761 - 47006588
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcaca 127  Q
    ||||||||||||  |||||||| |||||||||||||| |||||| | ||| ||| ||||| ||||||||| ||||||| ||||||||||||||||||||     
T  47006761 atgttaacttgtgccctaagggtacatgttaaggaacccaaaaaaagcaactttgcattggaaaacataacattttaaattttaagaagttgaatgcacg 47006662  T
Q  128 actttttgatac--atacttctataattagttcttcaacatgtgcccttaaggacaaaaattagcatttgccata 200  Q
    || ||||||| |  ||| ||||||||  ||||| | ||||||||||||| ||| || || ||| |||||||||||    
T  47006661 ac-ttttgatgcgaatatttctataaaaagttccttaacatgtgcccttgagggcacaagttaacatttgccata 47006588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 4540021 - 4539923
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcac 126  Q
    |||||||||||| |  ||| |||||||||||||||||||||||  ||||||||| ||||||||||||| ||| |||||||||||||||||||| |||||    
T  4540021 atgttaacttgtgttttaaaggcacatgttaaggaactcaaaatgaacaattttgcattgaaaaacatgataatttaacttttaagaagttgattgcac 4539923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 13638055 - 13637957
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcac 126  Q
    ||||||||||||| ||| |||||||||||||| ||||  ||||| ||||||||||| ||| ||||||||| ||||||| ||||||||| ||||||||||    
T  13638055 atgttaacttgtaccctgagggcacatgttaaagaacctaaaaaaaacaattttacgttggaaaacataacattttaatttttaagaatttgaatgcac 13637957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 134
Target Start/End: Complemental strand, 44418617 - 44418511
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcaca 127  Q
    |||||||||| | |||| |||| | |||||||| ||||||||||  |||| ||| |||||||||| ||||||| ||||||||||||||||| |||||||     
T  44418617 atgttaacttctgtcctcagggtatatgttaagtaactcaaaaaggacaactttgcattgaaaaatataatatattaacttttaagaagttaaatgcacg 44418518  T
Q  128 acttttt 134  Q
    |||||||    
T  44418517 acttttt 44418511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 139
Target Start/End: Complemental strand, 37919322 - 37919213
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcaca 127  Q
    |||||||||||| || | |||| |||||||||| |||  ||||  ||||| ||||||||| |||||||||||| | ||||||||||||||||||||||||    
T  37919322 atgttaacttgtttcttcagggtacatgttaagcaacataaaag-aacaactttacattggaaaacataatatgtcaacttttaagaagttgaatgcaca 37919224  T
Q  128 actttttgatac 139  Q
    | ||||||||||    
T  37919223 a-tttttgatac 37919213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 32 - 168
Target Start/End: Complemental strand, 19961294 - 19961158
Alignment:
Q  32 taacttgtatcctaagggcacatgttaaggaactcaaaaat-aacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaact 130  Q
    ||||||||| ||| | | |||||||||||||| || ||||| |||||||||  |||| |||||||||||||||||||| | ||||||||||| ||||||     
T  19961294 taacttgtacccttaagacacatgttaaggaa-tctaaaatgaacaattttgtattggaaaacataatattttaacttct-agaagttgaatacacaac- 19961198  T
Q  131 ttttgatac--atacttctataattagttcttcaacatgt 168  Q
    |||||||||  ||| ||||||||||||||| | |||||||    
T  19961197 ttttgatacgtatatttctataattagttccttaacatgt 19961158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 126
Target Start/End: Original strand, 52859539 - 52859613
Alignment:
Q  52 catgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcac 126  Q
    |||||||||||||||||||  ||||||||| ||| | ||||||| ||| |||||||||||||||||||| |||||    
T  52859539 catgttaaggaactcaaaatgaacaattttgcatcggaaaacatgatagtttaacttttaagaagttgactgcac 52859613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 133
Target Start/End: Complemental strand, 45628472 - 45628371
Alignment:
Q  32 taacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaactt 131  Q
    |||||||| |||||||||||||| |||||||||  ||||| | ||| | | ||| ||||||||||| ||||||| || ||| || |||||||||||||||    
T  45628472 taacttgtgtcctaagggcacatattaaggaacctaaaaaaagcaactctgcatcgaaaaacataacattttaatttctaaaaaattgaatgcacaactt 45628373  T
Q  132 tt 133  Q
    ||    
T  45628372 tt 45628371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 33791653 - 33791549
Alignment:
Q  19 ttatcggtaatgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagtt 118  Q
    |||| ||| ||||||||||||  ||||| |||| ||||||| |||   ||||| |  || ||||||||| |||||||||||||||||||||||| |||||    
T  33791653 ttatgggtcatgttaacttgtgccctaaaggcatatgttaaagaatcgaaaaagagtaactttacattggaaaacataatattttaacttttaaaaagtt 33791554  T
Q  119 gaatg 123  Q
    |||||    
T  33791553 gaatg 33791549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 47 - 197
Target Start/End: Complemental strand, 18030134 - 18029983
Alignment:
Q  47 gggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaactttttg-atacatactt 145  Q
    ||||||||||||||||||  ||||| |  || ||| ||||| |||| |||||||||| ||||||||||| |||||||||| |||||| | | | ||| ||    
T  18030134 gggcacatgttaaggaacctaaaaagagtaactttgcattggaaaatataatattttgacttttaagaaattgaatgcacgacttttcgtacatatattt 18030035  T
Q  146 ctataattagttcttcaacatgtgcccttaaggacaaaaattagcatttgcc 197  Q
    || || | ||||| | ||||||||||||| ||| || || ||| ||||||||    
T  18030034 ctttattaagttccttaacatgtgcccttgagggcataagttaacatttgcc 18029983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 123
Target Start/End: Original strand, 54787795 - 54787890
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatg 123  Q
    |||||||||||| |||| | |||||||| ||||||||  |||||  | || ||| |||||||||| |||| |||||||||||||||| ||||||||    
T  54787795 atgttaacttgtgtccttaaggcacatgataaggaacctaaaaaagataacttttcattgaaaaatataacattttaacttttaagatgttgaatg 54787890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 142
Target Start/End: Original strand, 25101979 - 25102090
Alignment:
Q  29 tgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaa 128  Q
    ||||||||| | ||||||||| |||| |||||||||  | ||| | |||||||  ||||||||| || |||||||||||||| ||||||| ||| |||||    
T  25101979 tgttaacttatgtcctaagggtacatattaaggaacctataaa-agcaattttgtattgaaaaatatgatattttaacttttgagaagttaaatacacaa 25102077  T
Q  129 ctttttgatacata 142  Q
     |||||||||||||    
T  25102078 -tttttgatacata 25102090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 139
Target Start/End: Complemental strand, 26040980 - 26040872
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcaca 127  Q
    |||||||||||| |||||||   ||||||||| ||||  ||||  | ||| ||| |||| |||||||||||||||||||||   ||||||| |||||||     
T  26040980 atgttaacttgtgtcctaagtatacatgttaaagaacctaaaaggagcaactttgcattaaaaaacataatattttaactt---agaagttaaatgcacg 26040884  T
Q  128 actttttgatac 139  Q
    ||||||||||||    
T  26040883 actttttgatac 26040872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 197
Target Start/End: Original strand, 47849920 - 47850090
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcaca 127  Q
    |||||||||||| | ||||||   |||| |||||||   ||||| | ||| ||| |||||||||| |||||||||||| |||||| |||| |||||||      
T  47849920 atgttaacttgtgttctaaggatgcatgctaaggaatctaaaaaaagcaactttgcattgaaaaatataatattttaatttttaaaaagtcgaatgcatg 47850019  T
Q  128 actttttgat--acatacttctataattagttcttcaacatgtgcccttaaggacaaaaattagcatttgcc 197  Q
    |  |||||||  | ||| ||||||||| ||||| | |||||||| |||| |||||| |||||| ||||||||    
T  47850020 a-attttgatagatatatttctataatgagttccttaacatgtgtccttgaggacacaaattaacatttgcc 47850090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 33466047 - 33466008
Alignment:
Q  86 tgaaaaacataatattttaacttttaagaagttgaatgca 125  Q
    ||||||||||||||||||||||||||| ||||| ||||||    
T  33466047 tgaaaaacataatattttaacttttaaaaagttaaatgca 33466008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 12789848 - 12789894
Alignment:
Q  24 ggtaatgttaacttgtatcctaagggcacatgttaaggaactcaaaa 70  Q
    |||| ||||||||||| |||| ||||||||||||||| |||||||||    
T  12789848 ggtagtgttaacttgtgtccttagggcacatgttaagaaactcaaaa 12789894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 45054801 - 45054759
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaa 70  Q
    ||||||||||||  ||||||||||||||||||| |||||||||    
T  45054801 atgttaacttgtgccctaagggcacatgttaagcaactcaaaa 45054759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 28 - 197
Target Start/End: Complemental strand, 42685874 - 42685705
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcaca 127  Q
    ||||||||||||||||||| |||||||||||||||| ||||||| | | ||||| |||||||||||||||||||||||||||| ||||||||| | |||     
T  42685874 atgttaacttgtatcctaaaggcacatgttaaggaattcaaaaaaagctattttgcattgaaaaacataatattttaactttttagaagttgactacacg 42685775  T
Q  128 actttttgat--acatacttctataattagttcttcaacatgtgcccttaaggacaaaaattagcatttgcc 197  Q
    || |||||||  ||||| ||||||||| | ||| |  ||||||||| | |||| || |||||||||||||||    
T  42685774 ac-ttttgatacacatatttctataataaattcct-tacatgtgccttcaagggcacaaattagcatttgcc 42685705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 28 - 197
Target Start/End: Complemental strand, 6530471 - 6530301
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcaca 127  Q
    |||||||||||| |||||||| ||||||||||| ||| |||||| | ||| ||| ||||| |||||||||||| || ||||||||||||||||||||||     
T  6530471 atgttaacttgtgtcctaaggacacatgttaagcaacccaaaaagagcaactttgcattggaaaacataatatattgacttttaagaagttgaatgcacg 6530372  T
Q  128 actttttgatac--atacttctataattagttcttcaacatgtgcccttaaggacaaaaattagcatttgcc 197  Q
    ||||||| || |  ||| |||| |||| ||||| | ||||||||||||| ||| || || ||||||||||||    
T  6530371 acttttt-atgcttatatttctttaataagttccttaacatgtgcccttgagggcacaagttagcatttgcc 6530301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 32 - 174
Target Start/End: Complemental strand, 8867342 - 8867200
Alignment:
Q  32 taacttgtatcctaagggcacatgttaaggaactcaaaaa--taacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaac 129  Q
    ||||||||  ||||| |||||||||||| |||| | ||||  |||||   |||||||  ||||||||| ||||||| |||||||||||||||||||||||    
T  8867342 taacttgtgccctaatggcacatgttaaagaacgctaaaaagtaaca---ttacattagaaaacataacattttaatttttaagaagttgaatgcacaac 8867246  T
Q  130 tttttgatac--atacttctataattagttcttcaacatgtgccctt 174  Q
     ||||||| |  ||| ||||||||| ||||||| |||||||||||||    
T  8867245 -ttttgatgcgtatatttctataatgagttctttaacatgtgccctt 8867200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 8114300 - 8114405
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcaca 127  Q
    ||||||||||||  |||||||||||||||||||||| | ||||  | ||||||| |||| |||||||| ||| ||||| |||||| || |||| |||||     
T  8114300 atgttaacttgtgccctaagggcacatgttaaggaatttaaaatgagcaattttgcattaaaaaacatgataatttaatttttaaaaaattgactgcacg 8114399  T
Q  128 actttt 133  Q
    ||||||    
T  8114400 actttt 8114405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 142
Target Start/End: Complemental strand, 7774713 - 7774648
Alignment:
Q  76 aattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaactttttgatacata 142  Q
    |||||||||||| ||||||||| |||||||  ||||||||||||||||||| || ||||||||||||    
T  7774713 aattttacattggaaaacataacattttaatgtttaagaagttgaatgcacgac-ttttgatacata 7774648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 142
Target Start/End: Complemental strand, 7791360 - 7791295
Alignment:
Q  76 aattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaactttttgatacata 142  Q
    |||||||||||| ||||||||| |||||||  ||||||||||||||||||| || ||||||||||||    
T  7791360 aattttacattggaaaacataacattttaatgtttaagaagttgaatgcacgac-ttttgatacata 7791295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 142
Target Start/End: Complemental strand, 7811944 - 7811879
Alignment:
Q  76 aattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaactttttgatacata 142  Q
    |||||||||||| ||||||||| |||||||  ||||||||||||||||||| || ||||||||||||    
T  7811944 aattttacattggaaaacataacattttaatgtttaagaagttgaatgcacgac-ttttgatacata 7811879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 174
Target Start/End: Original strand, 8768995 - 8769141
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaa-cttttaagaagttgaatgcac 126  Q
    |||||||||||| ||||||| |||||||||||| ||| | |||| | ||| |||| |||| |||| || ||||||||| ||||||||||  |||||||||    
T  8768995 atgttaacttgtgtcctaagagcacatgttaagaaac-ctaaaagagcaactttatattg-aaaatatgatattttaaccttttaagaatatgaatgcac 8769092  T
Q  127 aactttttgatac--atacttctataattagttcttcaacatgtgccctt 174  Q
    |||||||| ||||  ||| ||||||||| ||||| | || ||||||||||    
T  8769093 aacttttt-atacatatatttctataatgagttccttaagatgtgccctt 8769141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 197
Target Start/End: Complemental strand, 31313450 - 31313302
Alignment:
Q  50 cacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaactttttgatac--atacttct 147  Q
    ||||||||||| ||   ||||| | ||| ||| ||||| |||||||||||| | ||||||||| ||||||||||||  || |||||||||  ||| ||||    
T  31313450 cacatgttaagcaatctaaaaagagcaactttgcattggaaaacataatatgtcaacttttaaaaagttgaatgcatgac-ttttgatacgtatatttct 31313352  T
Q  148 ataattagttcttcaacatgtgcccttaaggacaaaaattagcatttgcc 197  Q
    ||||| | ||| | ||||||||||||| ||| || || ||||||||||||    
T  31313351 ataatgacttccttaacatgtgcccttgagggcacaagttagcatttgcc 31313302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 131
Target Start/End: Original strand, 39491633 - 39491711
Alignment:
Q  53 atgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaactt 131  Q
    ||||||| ||||  ||||| ||||||||  ||||||||||||||| ||||||| ||| |||||||||||||||| ||||    
T  39491633 atgttaatgaacaaaaaaaaaacaatttcgcattgaaaaacataacattttaattttaaagaagttgaatgcacgactt 39491711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 133
Target Start/End: Original strand, 17920216 - 17920265
Alignment:
Q  84 attgaaaaacataatattttaacttttaagaagttgaatgcacaactttt 133  Q
    ||||||||||||||||||| |||||||||||||||||||| || ||||||    
T  17920216 attgaaaaacataatatttcaacttttaagaagttgaatgtacgactttt 17920265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 112
Target Start/End: Original strand, 13933045 - 13933129
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaa 112  Q
    |||||||||| | |||||| | ||| |||||| ||||||||||| |  || ||| ||||||||||||||||||||||| ||||||    
T  13933045 atgttaacttatgtcctaatgacacgtgttaaagaactcaaaaagagtaactttgcattgaaaaacataatattttaatttttaa 13933129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 15067737 - 15067632
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaaataa-caattttacattgaaaaacataatattttaacttttaagaagttgaatgcac 126  Q
    ||||||||||||  | ||| ||||||||||||||||| | ||||||| ||| ||| ||||| ||||||| ||| |||||||||| |||| |||| |||||    
T  15067737 atgttaacttgtgccgtaaaggcacatgttaaggaac-ctaaaataagcaactttgcattggaaaacatcataatttaacttttgagaaattgactgcac 15067639  T
Q  127 aactttt 133  Q
     ||||||    
T  15067638 gactttt 15067632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 133
Target Start/End: Original strand, 39699609 - 39699667
Alignment:
Q  75 caattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaactttt 133  Q
    ||||||||||||  ||||||||||| |||||||||||| ||||| ||||||| ||||||    
T  39699609 caattttacattataaaacataatactttaacttttaaaaagttaaatgcacgactttt 39699667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 133
Target Start/End: Original strand, 40505305 - 40505355
Alignment:
Q  83 cattgaaaaacataatattttaacttttaagaagttgaatgcacaactttt 133  Q
    |||| ||||| || |||||||||||||||||||||||||||||| ||||||    
T  40505305 cattaaaaaatatgatattttaacttttaagaagttgaatgcacgactttt 40505355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 34576792 - 34576748
Alignment:
Q  89 aaaacataatattttaacttttaagaagttgaatgcacaactttt 133  Q
    |||||||||||| |||| |||||||||||||||||||| ||||||    
T  34576792 aaaacataatatgttaatttttaagaagttgaatgcacgactttt 34576748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 120
Target Start/End: Complemental strand, 35865297 - 35865205
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttga 120  Q
    |||||||| |||  ||||||| |||||||||| ||||  |||||    |||||||||||  |||| ||||||||||||||||||| |||||||    
T  35865297 atgttaacctgtgccctaaggacacatgttaaagaacctaaaaagtgtaattttacattagaaaatataatattttaacttttaaaaagttga 35865205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 12703571 - 12703524
Alignment:
Q  76 aattttacattgaaaaacataatattttaacttttaagaagttgaatg 123  Q
    ||||||| |||||||||||||||||||||| |||| |||| |||||||    
T  12703571 aattttatattgaaaaacataatattttaatttttgagaaattgaatg 12703524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 13949111 - 13949029
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaactttt 110  Q
    |||||||||||| ||||||  ||||||||||||||||  ||||  | ||| |||| ||| |||||||| ||| ||||||||||    
T  13949111 atgttaacttgtgtcctaaaagcacatgttaaggaacgtaaaatgagcaactttatattaaaaaacatgataatttaactttt 13949029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 133
Target Start/End: Original strand, 21574281 - 21574335
Alignment:
Q  79 tttacattgaaaaacataatattttaacttttaagaagttgaatgcacaactttt 133  Q
    |||||||| ||||| || |||| ||||||||||||||||||||| ||| ||||||    
T  21574281 tttacattaaaaaaaattatatattaacttttaagaagttgaatacacgactttt 21574335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 9034208 - 9034252
Alignment:
Q  29 tgttaacttgtatcctaagggcacatgttaaggaactcaaaaataa 74  Q
    |||||||||||||||||| ||||||||||||| |||||||| ||||    
T  9034208 tgttaacttgtatcctaa-ggcacatgttaagaaactcaaatataa 9034252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 20668787 - 20668835
Alignment:
Q  79 tttacattgaaaaacataatattttaacttttaagaagttgaatgcaca 127  Q
    |||||||||| ||| |||||||||| | |||||| ||||||||||||||    
T  20668787 tttacattgagaaaaataatattttgatttttaaaaagttgaatgcaca 20668835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 32 - 197
Target Start/End: Complemental strand, 32786951 - 32786785
Alignment:
Q  32 taacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaactt 131  Q
    ||||||||  ||||||||||||||||||||||| | |||| | ||| |||  |||| |||||||||||||||||||||||||||||||||||||| || |    
T  32786951 taacttgtgccctaagggcacatgttaaggaacccgaaaagagcaactttgtattggaaaacataatattttaacttttaagaagttgaatgcacgac-t 32786853  T
Q  132 tttgatac--atacttctataattagttcttcaacatgtgcccttaaggacaaaaattagcatttgcc 197  Q
    ||||||||  ||| || |||||| ||||| | ||||||||||||| ||| || || ||||||||||||    
T  32786852 tttgatacgtatatttatataatgagttccttaacatgtgcccttgagggcacaagttagcatttgcc 32786785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 43 - 195
Target Start/End: Original strand, 26080984 - 26081137
Alignment:
Q  43 ctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaactttttgata--ca 140  Q
    |||||||||||||||||||||| |||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||  |||||| ||||| |||   |    
T  26080984 ctaagggcacatgttaaggaacccaaaaagaacaattttgcattgtaaaacataatattttaacttttaagaagttgacggcacaa-tttttaatatgta 26081082  T
Q  141 tacttctataattagttcttcaacatgtgcccttaaggacaaaaattagcatttg 195  Q
    || ||||||||| ||||| | || ||||||| || |||||| || ||||||||||    
T  26081083 tatttctataatgagttccttaatatgtgccattgaggacacaagttagcatttg 26081137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 43 - 195
Target Start/End: Original strand, 26104771 - 26104924
Alignment:
Q  43 ctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaactttttgata--ca 140  Q
    |||||||||||||||||||||| |||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||  |||||| ||||| |||   |    
T  26104771 ctaagggcacatgttaaggaacccaaaaagaacaattttgcattgtaaaacataatattttaacttttaagaagttgacggcacaa-tttttaatatgta 26104869  T
Q  141 tacttctataattagttcttcaacatgtgcccttaaggacaaaaattagcatttg 195  Q
    || ||||||||| ||||| | || ||||||| || |||||| || ||||||||||    
T  26104870 tatttctataatgagttccttaatatgtgccattgaggacacaagttagcatttg 26104924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 25119904 - 25119798
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaaataac-aattttacattgaaaaacataatattttaacttttaagaagttgaatgcac 126  Q
    ||||||||||||  |||||||||||||||||||||||  ||||| ||  || ||| ||||||||| |||||||||||||||||||||||||  |||||||    
T  25119904 atgttaacttgtgccctaagggcacatgttaaggaacaaaaaaaaaagtaactttgcattgaaaatcataatattttaacttttaagaagtcaaatgcac 25119805  T
Q  127 aactttt 133  Q
     ||||||    
T  25119804 gactttt 25119798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 52 - 133
Target Start/End: Complemental strand, 31054314 - 31054233
Alignment:
Q  52 catgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaactttt 133  Q
    ||||||||||||| |||||| ||||| ||||||||| | || |||||||||||||||||||||||||||||| || ||||||    
T  31054314 catgttaaggaacacaaaaagaacaactttacattggagaatataatattttaacttttaagaagttgaatgtacgactttt 31054233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 2033755 - 2033669
Alignment:
Q  48 ggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaacttttt 134  Q
    ||||||||||||  |||||||||| || |||||| |||||||||| |||| || | ||||||||| ||||||||||||||| |||||    
T  2033755 ggcacatgttaaacaactcaaaaaaaataattttgcattgaaaaatataacatatcaacttttaaaaagttgaatgcacaatttttt 2033669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 47390511 - 47390617
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaag-gaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcac 126  Q
    ||||||||||||| ||||| |  |||||||||  ||||| ||||  |||||||||  ||||||||||||||||||| |||||| ||||||||||||| ||    
T  47390511 atgttaacttgtaccctaatgatacatgttaaaagaacttaaaatgaacaattttgtattgaaaaacataatatttgaactttcaagaagttgaatgtac 47390610  T
Q  127 aactttt 133  Q
     ||||||    
T  47390611 gactttt 47390617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 42 - 174
Target Start/End: Complemental strand, 28337355 - 28337222
Alignment:
Q  42 cctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaactttttgatac-- 139  Q
    ||||| || |||||||||||||   ||||| | ||| ||| |||||||||| ||| ||||||||||||||||||||||| ||||| | ||||| ||||      
T  28337355 cctaaaggtacatgttaaggaatctaaaaagagcaactttgcattgaaaaatatagtattttaacttttaagaagttgattgcacga-ttttttatacat 28337257  T
Q  140 atacttctataattagttcttcaacatgtgccctt 174  Q
    ||| ||||||||| ||||  | |||||||||||||    
T  28337256 atatttctataatgagtttcttaacatgtgccctt 28337222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 125
Target Start/End: Original strand, 37929107 - 37929203
Alignment:
Q  29 tgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgca 125  Q
    |||||| ||||||| |||   ||||||||||| || |||| ||||||||||||  ||  |||| ||||||||||||| |||||| ||||||||||||    
T  37929107 tgttaatttgtatcttaaaaacacatgttaagaaattcaacaataacaattttgaatcaaaaatcataatattttaatttttaaaaagttgaatgca 37929203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 123
Target Start/End: Original strand, 28324581 - 28324676
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatg 123  Q
    |||||||||||| |  ||||| ||||||||||  ||  |||||| | ||||||| ||||| |||||||||||| |||| |||||| ||||||||||    
T  28324581 atgttaacttgtgttttaaggacacatgttaaacaatccaaaaacagcaattttgcattggaaaacataatatattaagttttaataagttgaatg 28324676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 118
Target Start/End: Original strand, 47990935 - 47991029
Alignment:
Q  24 ggtaatgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagtt 118  Q
    |||||||||||||||| ||||||||| | ||||||||||||  ||||  |  || ||| ||||| ||||||| ||| ||||||||||||| ||||    
T  47990935 ggtaatgttaacttgtgtcctaagggtatatgttaaggaacctaaaatgagtaactttgcattggaaaacatgataatttaacttttaaggagtt 47991029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 133
Target Start/End: Complemental strand, 31399421 - 31399338
Alignment:
Q  48 ggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaactttt 133  Q
    ||||||||||||||||| |||||| |||||||||| ||| ||||| || ||| |||||||||||| ||||| |||  |||||||||    
T  31399421 ggcacatgttaaggaac-caaaaa-aacaattttatattaaaaaatatgatagtttaacttttaaaaagttaaatatacaactttt 31399338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 32546871 - 32546767
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcaca 127  Q
    ||||||||||||  ||| ||||||||| ||||||||| |||||  | ||||||  |||| ||||| || ||| |||||||||||||||||||| ||| |     
T  32546871 atgttaacttgtgcccttagggcacatattaaggaacccaaaatgagcaatttg-cattaaaaaatatgataatttaacttttaagaagttgattgcccg 32546773  T
Q  128 actttt 133  Q
    ||||||    
T  32546772 actttt 32546767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 39837397 - 39837502
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcaca 127  Q
    ||||||||||||  ||| |||||| |||||||  ||   ||||||| ||| ||| || ||||||| ||||||  | |||||||||||||||||||||||     
T  39837397 atgttaacttgtgcccttagggcatatgttaaataatctaaaaatagcaactttgcactgaaaaatataataggtcaacttttaagaagttgaatgcacg 39837496  T
Q  128 actttt 133  Q
    ||||||    
T  39837497 actttt 39837502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 63
Target Start/End: Original strand, 2741392 - 2741427
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaa 63  Q
    ||||||||||||||||||||||||| ||||||||||    
T  2741392 atgttaacttgtatcctaagggcacgtgttaaggaa 2741427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 34963655 - 34963698
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaaa 71  Q
    |||||||||| | | |||||||||||||||||||||||||||||    
T  34963655 atgttaacttctcttctaagggcacatgttaaggaactcaaaaa 34963698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 29 - 133
Target Start/End: Complemental strand, 29508828 - 29508724
Alignment:
Q  29 tgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaa 128  Q
    |||||||||||  ||||||||||||||||||||||| |||||| | ||||||| ||||| |||||||||||||| ||||||||||||||||||| ||| |    
T  29508828 tgttaacttgtgccctaagggcacatgttaaggaacccaaaaagagcaattttgcattggaaaacataatatttaaacttttaagaagttgaatacacga 29508729  T
Q  129 ctttt 133  Q
    |||||    
T  29508728 ctttt 29508724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 44 - 196
Target Start/End: Original strand, 27918348 - 27918501
Alignment:
Q  44 taagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaactttttgatac--at 141  Q
    ||||||||||||||||||||  |||||| | ||||||| |||||||||| ||||||||||||||||||||||||| ||||||| || |||||||||  ||    
T  27918348 taagggcacatgttaaggaatccaaaaagagcaattttgcattgaaaaatataatattttaacttttaagaagtttaatgcacgac-ttttgatacatat 27918446  T
Q  142 acttctataattagttcttcaacatgtgcccttaaggacaaaaattagcatttgc 196  Q
    | ||||||||  ||||| | |||||||| |||| ||| || || |||||||||||    
T  27918447 atttctataacgagttccttaacatgtgtccttgagggcacaagttagcatttgc 27918501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 134
Target Start/End: Complemental strand, 24940794 - 24940689
Alignment:
Q  29 tgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaa 128  Q
    |||||||||||  |||||| |||||||||||| ||  |||||| | ||| ||| |||||||||||||||||| ||||||||||||||||||||||||| |    
T  24940794 tgttaacttgttccctaagagcacatgttaagcaatccaaaaagagcaagtttgcattgaaaaacataatatattaacttttaagaagttgaatgcacga 24940695  T
Q  129 cttttt 134  Q
    ||||||    
T  24940694 cttttt 24940689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 28 - 196
Target Start/End: Original strand, 564107 - 564276
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcaca 127  Q
    ||||||||||||| ||| |||||||||||||||||| | ||||| | ||| ||| ||||| ||||||||| ||||||| |||||||||||  ||||||||    
T  564107 atgttaacttgtacccttagggcacatgttaaggaatttaaaaagagcaactttgcattgcaaaacataacattttaatttttaagaagtcaaatgcaca 564206  T
Q  128 actttttgatac--atacttctataattagttcttcaacatgtgcccttaaggacaaaaattagcatttgc 196  Q
    | ||||| ||||  ||| ||||||||| |  || | ||||||| ||||| |||||| || ||| |||||||    
T  564207 a-tttttaatacgtatatttctataataaactccttaacatgtacccttgaggacacaagttaacatttgc 564276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 201
Target Start/End: Original strand, 28675681 - 28675855
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcaca 127  Q
    ||||||||||||  ||| ||||||||||||||| |||  || || | ||||||| ||||  |||||||||||| |  ||||||||  ||||||||||| |    
T  28675681 atgttaacttgtgcccttagggcacatgttaagcaacctaataagagcaattttgcattagaaaacataatatatcgacttttaaacagttgaatgcaaa 28675780  T
Q  128 actttttgatac--atacttctataattagttcttcaacatgtgcccttaaggacaaaaattagcatttgccataa 201  Q
    | |||| ||||   ||| ||||||||| | ||| | |||||||||||||||||||| || ||||||||||||||||    
T  28675781 aatttt-gatatgtatatttctataatgacttccttaacatgtgcccttaaggacataagttagcatttgccataa 28675855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 28 - 197
Target Start/End: Complemental strand, 22019554 - 22019384
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcaca 127  Q
    ||||||||||||  ||||||||||||||||||| ||| | ||||   ||||||||||||| |||| || ||| ||| | |||| |||||||||||| ||     
T  22019554 atgttaacttgtgccctaagggcacatgttaagaaacccgaaaagggcaattttacattggaaaatatgatagtttcattttttagaagttgaatgtacg 22019455  T
Q  128 actttttgat--acatacttctataattagttcttcaacatgtgcccttaaggacaaaaattagcatttgcc 197  Q
    | ||||| ||  | ||| ||||||||| ||||||| |||||||| |||| ||| || || ||||||||||||    
T  22019454 a-tttttaatgcatatatttctataatgagttctttaacatgtgtccttgagggcacaagttagcatttgcc 22019384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 174
Target Start/End: Complemental strand, 14139140 - 14138993
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcaca 127  Q
    |||||||||||| || ||||||||||||||||||||| | |||| |  |||| |  |||| |||| |||||||||||||||||||||| |||| | |||     
T  14139140 atgttaacttgtgtcttaagggcacatgttaaggaaccctaaaaaagtaattatgtattggaaaatataatattttaacttttaagaaattgactacacg 14139041  T
Q  128 actttttgatac--atacttctataattagttcttcaacatgtgccctt 174  Q
    | ||||||||||  ||| ||||||||   |||| | |||||||||||||    
T  14139040 a-tttttgatacgtatatttctataaagggttcattaacatgtgccctt 14138993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 30033480 - 30033556
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatatttta 104  Q
    ||||||||||||  ||||| |||| ||||||||||||||||||| | ||| ||| ||||| ||||||||||||||||    
T  30033480 atgttaacttgtgccctaaaggcatatgttaaggaactcaaaaagagcaactttgcattggaaaacataatatttta 30033556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 54997698 - 54997797
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacatt-gaaaaacataatattttaacttttaagaagttgaatgcac 126  Q
    |||||||||||| || | ||||||||||||||| |||  ||||| | ||||||| |||| |||||||  ||||||  |||||||||||||||||||||||    
T  54997698 atgttaacttgtgtcattagggcacatgttaagcaacctaaaaagagcaattttgcattggaaaaacgcaatattacaacttttaagaagttgaatgcac 54997797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 20537298 - 20537404
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaa-ctcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcac 126  Q
    |||||||||| |  |||||||||| |||||||||||    |||||||| ||||||  |||| ||||||||||||||||| || |||||||||||||  ||    
T  20537298 atgttaacttatgccctaagggcatatgttaaggaataaaaaaaataataattttgtattggaaaacataatattttaatttctaagaagttgaatatac 20537397  T
Q  127 aactttt 133  Q
    |||||||    
T  20537398 aactttt 20537404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 133
Target Start/End: Complemental strand, 36989996 - 36989893
Alignment:
Q  29 tgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatatttt-aacttttaagaagttgaatgcaca 127  Q
    ||||||| ||| ||||||||  |||||||||||||   |||||   ||| ||| ||||| ||||||||||||||| |||||||||||||||||||||||     
T  36989996 tgttaacctgtgtcctaagg--acatgttaaggaatctaaaaagtgcaactttgcattggaaaacataatattttgaacttttaagaagttgaatgcacg 36989899  T
Q  128 actttt 133  Q
    ||||||    
T  36989898 actttt 36989893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 50297633 - 50297731
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcac 126  Q
    ||||||||||||  ||| ||||||||||||||| |||  ||||| |  |||||| ||||| |||||| |||||   |||||||||||||||||||||||    
T  50297633 atgttaacttgtgcccttagggcacatgttaagcaaccaaaaaagagtaattttgcattggaaaacacaatatgacaacttttaagaagttgaatgcac 50297731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 100 - 197
Target Start/End: Complemental strand, 1961703 - 1961605
Alignment:
Q  100 ttttaacttttaagaagttgaatgcacaactttttgatac--atacttctataattagttcttcaacatgtgcccttaaggacaaaaattagcatttgcc 197  Q
    ||||||||||| ||||||||||||||| |||||| ||||   ||| ||||||||| |||| || ||||||||||||| ||| || |||||| ||||||||    
T  1961703 ttttaactttttagaagttgaatgcacgactttt-gatatttatatttctataataagttttttaacatgtgcccttgagggcacaaattaacatttgcc 1961605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 45249947 - 45249991
Alignment:
Q  89 aaaacataatattttaacttttaagaagttgaatgcacaactttt 133  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||    
T  45249947 aaaacataatattttaaattttaagaagttgaatgcacgactttt 45249991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 31861214 - 31861167
Alignment:
Q  24 ggtaatgttaacttgtatcctaagggcacatgttaaggaactcaaaaa 71  Q
    |||||||||||||||| |||||| ||||||||||||| ||||||||||    
T  31861214 ggtaatgttaacttgtgtcctaaaggcacatgttaagaaactcaaaaa 31861167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 132
Target Start/End: Original strand, 34936371 - 34936452
Alignment:
Q  51 acatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaacttt 132  Q
    |||||||||  |||| ||||| | ||| |||| ||| ||||||||||||||||||||||||| ||||| |||| || |||||    
T  34936371 acatgttaaaaaacttaaaaagagcaactttatattaaaaaacataatattttaacttttaaaaagttaaatgtacgacttt 34936452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 42051169 - 42051221
Alignment:
Q  89 aaaacataatattttaacttttaagaagttgaatgcacaactttttgatacata 142  Q
    |||| ||||||||||||||||||| ||||||||||||| || ||||||||||||    
T  42051169 aaaatataatattttaacttttaacaagttgaatgcacgac-ttttgatacata 42051221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 122
Target Start/End: Original strand, 11397525 - 11397601
Alignment:
Q  46 agggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaat 122  Q
    ||||||||||||||| ||||||||| ||  |||||| |||||||||  ||||| |||  ||||||||||| ||||||    
T  11397525 agggcacatgttaagtaactcaaaattagaaattttgcattgaaaagaataatttttgtacttttaagaatttgaat 11397601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 122
Target Start/End: Original strand, 11407252 - 11407328
Alignment:
Q  46 agggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaat 122  Q
    ||||||||||||||| ||||||||| ||  |||||| |||||||||  ||||| |||  ||||||||||| ||||||    
T  11407252 agggcacatgttaagtaactcaaaattagaaattttgcattgaaaagaataatttttgtacttttaagaatttgaat 11407328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 133
Target Start/End: Complemental strand, 24744068 - 24744008
Alignment:
Q  73 aacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaactttt 133  Q
    ||||||||| ||||| ||||||||| ||||||| ||| ||||||||||||| || ||||||    
T  24744068 aacaattttgcattggaaaacataacattttaattttaaagaagttgaatgtacgactttt 24744008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 123
Target Start/End: Original strand, 1008948 - 1008987
Alignment:
Q  84 attgaaaaacataatattttaacttttaagaagttgaatg 123  Q
    |||| ||||||||||||||||||||||||| |||||||||    
T  1008948 attggaaaacataatattttaacttttaagtagttgaatg 1008987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 36937128 - 36937195
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacat 95  Q
    ||||||| ||||  ||||| | |||||||||||||||||||| | | ||||||||||||| |||||||    
T  36937128 atgttaatttgtgccctaatgacacatgttaaggaactcaaacagagcaattttacattggaaaacat 36937195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 133
Target Start/End: Original strand, 39233184 - 39233266
Alignment:
Q  50 cacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaactttt 133  Q
    ||||||||||| |||  |||||||||||||||| || || ||| | |||||||||| |||||| ||||| |||| |||||||||    
T  39233184 cacatgttaagaaacctaaaaataacaattttatatcgataaaaaaaatattttaatttttaa-aagttaaatgaacaactttt 39233266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 134
Target Start/End: Complemental strand, 39260091 - 39260056
Alignment:
Q  99 attttaacttttaagaagttgaatgcacaacttttt 134  Q
    ||||||| ||||||||||||||||||||||||||||    
T  39260091 attttaatttttaagaagttgaatgcacaacttttt 39260056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 133
Target Start/End: Original strand, 40311677 - 40311779
Alignment:
Q  31 ttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaact 130  Q
    |||||||||||| ||| | ||||||||||| | | |||||| | | | |||  |||| ||||||||||||||||| ||||||||| |||| | ||| |||    
T  40311677 ttaacttgtatcttaaagacacatgttaagtatcccaaaaagagctactttgtattggaaaacataatattttaatttttaagaaattgactacacgact 40311776  T
Q  131 ttt 133  Q
    |||    
T  40311777 ttt 40311779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 133
Target Start/End: Original strand, 40321753 - 40321855
Alignment:
Q  31 ttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaact 130  Q
    |||||||||||| ||| | ||||||||||| | | |||||| | | | |||  |||| ||||||||||||||||| ||||||||| |||| | ||| |||    
T  40321753 ttaacttgtatcttaaagacacatgttaagtatcccaaaaagagctactttgtattggaaaacataatattttaatttttaagaaattgactacacgact 40321852  T
Q  131 ttt 133  Q
    |||    
T  40321853 ttt 40321855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 54719665 - 54719710
Alignment:
Q  75 caattttacattgaaaaacataatattttaacttttaagaagttga 120  Q
    ||||||| |||||||||| || ||| ||||||||||||||||||||    
T  54719665 caattttgcattgaaaaatatgataatttaacttttaagaagttga 54719710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 28 - 197
Target Start/End: Complemental strand, 3787593 - 3787423
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcaca 127  Q
    |||||||||| | ||||||||||||||||||| ||| ||||||| | ||||||||||||  ||||||| ||| ||||||||||||||| ||||||| |      
T  3787593 atgttaacttatgtcctaagggcacatgttaatgaattcaaaaagagcaattttacattagaaaacatgatagtttaacttttaagaaattgaatgtatg 3787494  T
Q  128 actttttgatac--atacttctataattagttcttcaacatgtgcccttaaggacaaaaattagcatttgcc 197  Q
    || |||| ||||  ||| || |||||| ||||||| |||||||| |||| ||| || |||||||||||||||    
T  3787493 ac-ttttaatacgtatatttttataataagttctttaacatgtgtccttgagggcacaaattagcatttgcc 3787423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 49 - 142
Target Start/End: Complemental strand, 1065732 - 1065640
Alignment:
Q  49 gcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaactttttgatacata 142  Q
    ||||||||||||||||||||||| || ||||||| |||| |||| |||||| |||||||||||| |||||||||| || || ||||||||||||    
T  1065732 gcacatgttaaggaactcaaaaagaataattttatattggaaaatataatagtttaacttttaataagttgaatgtacgac-ttttgatacata 1065640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 83 - 195
Target Start/End: Complemental strand, 30249254 - 30249141
Alignment:
Q  83 cattgaaaaacataatattttaacttttaagaagttgaatgcacaactttttgatac--atacttctataattagttcttcaacatgtgcccttaaggac 180  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |  |||||||||  ||| ||||||||| ||||| | |||||||| | |||||| |    
T  30249254 cattgaaaaacataatattttaacttttaagaagttgactgcacga-attttgatacctatatttctataatgagttccttaacatgtgtcattaagggc 30249156  T
Q  181 aaaaattagcatttg 195  Q
    | || ||||||||||    
T  30249155 acaagttagcatttg 30249141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 62 - 133
Target Start/End: Complemental strand, 8504599 - 8504528
Alignment:
Q  62 aactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaactttt 133  Q
    |||| ||||| ||||| |||| ||||||||| |||||||||||| ||||||||| |||||||||||||||||    
T  8504599 aacttaaaaagaacaactttatattgaaaaatataatattttaatttttaagaaattgaatgcacaactttt 8504528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 133
Target Start/End: Complemental strand, 5850061 - 5849979
Alignment:
Q  51 acatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaactttt 133  Q
    |||||||||||||| |||||| | ||||||| ||||  |||||||||| | |||| ||||||||||||||||| || ||||||    
T  5850061 acatgttaaggaacgcaaaaagagcaattttgcatttgaaaacataatttgttaatttttaagaagttgaatgtactactttt 5849979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 6469562 - 6469651
Alignment:
Q  44 taagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaactttt 133  Q
    |||||||| ||||||| ||||  ||||  | ||| ||| ||||||||||||| ||| ||||| |||||||||||||| ||||| ||||||    
T  6469562 taagggcatatgttaaagaaccgaaaatgagcaactttgcattgaaaaacatgataatttaatttttaagaagttgactgcacgactttt 6469651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 126
Target Start/End: Complemental strand, 20087258 - 20087216
Alignment:
Q  84 attgaaaaacataatattttaacttttaagaagttgaatgcac 126  Q
    ||||||||  |||||||||||| ||||||||||||||||||||    
T  20087258 attgaaaattataatattttaatttttaagaagttgaatgcac 20087216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 126
Target Start/End: Complemental strand, 20129001 - 20128959
Alignment:
Q  84 attgaaaaacataatattttaacttttaagaagttgaatgcac 126  Q
    ||||||||  |||||||||||| ||||||||||||||||||||    
T  20129001 attgaaaattataatattttaatttttaagaagttgaatgcac 20128959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 126
Target Start/End: Original strand, 22203869 - 22203911
Alignment:
Q  84 attgaaaaacataatattttaacttttaagaagttgaatgcac 126  Q
    ||||||||  |||||||||||| ||||||||||||||||||||    
T  22203869 attgaaaattataatattttaatttttaagaagttgaatgcac 22203911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 126
Target Start/End: Complemental strand, 29286074 - 29286036
Alignment:
Q  88 aaaaacataatattttaacttttaagaagttgaatgcac 126  Q
    ||||| |||||||||||| ||||||||||||||||||||    
T  29286074 aaaaatataatattttaaattttaagaagttgaatgcac 29286036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 2831462 - 2831425
Alignment:
Q  89 aaaacataatattttaacttttaagaagttgaatgcac 126  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  2831462 aaaacataacattttaatttttaagaagttgaatgcac 2831425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 125
Target Start/End: Complemental strand, 11659400 - 11659323
Alignment:
Q  48 ggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgca 125  Q
    ||||||||||||| | |||||||| ||||| |||| |||| |||||| | ||| | ||||||||| ||||| ||||||    
T  11659400 ggcacatgttaagcatctcaaaaagaacaactttatattggaaaacacattatatcaacttttaataagttcaatgca 11659323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 133
Target Start/End: Original strand, 2614366 - 2614402
Alignment:
Q  97 atattttaacttttaagaagttgaatgcacaactttt 133  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  2614366 atattttaactttttagaagttgaatgcacgactttt 2614402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 133
Target Start/End: Complemental strand, 31635602 - 31635501
Alignment:
Q  32 taacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaactt 131  Q
    |||||||||  ||||||||||||||||||||||  ||||| ||||||||  || |  |||||||||||||||||||||||||||||||||||||| ||||    
T  31635602 taacttgtactctaagggcacatgttaaggaacctaaaaagaacaatttagcactagaaaacataatattttaacttttaagaagttgaatgcacgactt 31635503  T
Q  132 tt 133  Q
    ||    
T  31635502 tt 31635501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 46 - 195
Target Start/End: Complemental strand, 1035715 - 1035565
Alignment:
Q  46 agggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaactttttgata--catac 143  Q
    |||||| |||||||| ||| |||||| ||||| ||| ||| |||||| ||||||||||||||||||| ||||||||||||  || ||||||||   |||     
T  1035715 agggcatatgttaagaaacccaaaaagaacaactttgcatcgaaaaatataatattttaacttttaataagttgaatgcaagac-ttttgatatgtatat 1035617  T
Q  144 ttctataattagttcttcaacatgtgcccttaaggacaaaaattagcatttg 195  Q
    ||||||||| ||||| | ||||||||||||| ||| || || ||| ||||||    
T  1035616 ttctataatgagttccttaacatgtgcccttgagggcacaagttaacatttg 1035565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 50 - 126
Target Start/End: Original strand, 26176327 - 26176403
Alignment:
Q  50 cacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcac 126  Q
    |||||||||||||||  |||| |||||||||| ||||||||||||||||||||| |||||||| ||| |||||||||    
T  26176327 cacatgttaaggaaccaaaaagtaacaattttgcattgaaaaacataatattttgacttttaaaaagatgaatgcac 26176403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 50 - 138
Target Start/End: Complemental strand, 31262702 - 31262615
Alignment:
Q  50 cacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaactttttgata 138  Q
    ||||||||||  |||  ||||| ||||||||| ||||| |||||||||||| | ||||||||||||||||||||||||| |||||||||    
T  31262702 cacatgttaaacaacctaaaaaaaacaattttgcattggaaaacataatatgtcaacttttaagaagttgaatgcacaa-tttttgata 31262615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 174
Target Start/End: Original strand, 11017957 - 11018085
Alignment:
Q  47 gggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaactttttgatac--atact 144  Q
    ||||||||||||||||||  ||||  | ||| ||| ||||| ||||||| ||| |||||||||||||||||||| ||||| || |||| ||||  ||| |    
T  11017957 gggcacatgttaaggaacctaaaatgagcaactttgcattggaaaacatgataatttaacttttaagaagttgactgcacgac-ttttaatacgtatatt 11018055  T
Q  145 tctataattagttcttcaacatgtgccctt 174  Q
    |||||||| ||||| | |||||||||||||    
T  11018056 tctataataagttccttaacatgtgccctt 11018085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 41884606 - 41884704
Alignment:
Q  19 ttatcggtaatgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagt 117  Q
    |||| ||||||||||||||||  | ||| |||||||||||||||||  || || ||||| ||| ||||| |||| | ||||||||||||||||||||||    
T  41884606 ttatgggtaatgttaacttgtgccttaaaggcacatgttaaggaacctaacaaaaacaactttgcattggaaaataaaatattttaacttttaagaagt 41884704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 42066781 - 42066684
Alignment:
Q  31 ttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaact 130  Q
    ||||||||||  ||||||||||||||||||||||     || ||||||| |  |||||||||||||| |||| ||||||||||| ||||||||||| |||    
T  42066781 ttaacttgtactctaagggcacatgttaaggaac-----aaaaacaattctgtattgaaaaacataacatttcaacttttaagatgttgaatgcacgact 42066687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 4084863 - 4084758
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcaca 127  Q
    |||||||||||| | |||||||||| |||||| |||| |||||  | ||| ||||||||||||||||| ||  |||||||||||| ||||||| | |||     
T  4084863 atgttaacttgtgttctaagggcacgtgttaaagaacccaaaataagcaaatttacattgaaaaacatgattatttaacttttaaaaagttgactacacg 4084764  T
Q  128 actttt 133  Q
    ||||||    
T  4084763 actttt 4084758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 16394974 - 16394901
Alignment:
Q  44 taagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagt 117  Q
    |||||||||| |||||||||| |||||  ||||| ||| ||||||||||||| ||| |||||||||||||||||    
T  16394974 taagggcacaagttaaggaacccaaaatgaacaactttgcattgaaaaacatgataatttaacttttaagaagt 16394901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 200
Target Start/End: Original strand, 28490511 - 28490667
Alignment:
Q  44 taagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaactttttgatacatac 143  Q
    ||||| || ||||||||||||||||||| | ||| | |  ||| ||||||||||||||||||||||| ||||||||| ||||| | |||   ||  |||     
T  28490511 taaggacatatgttaaggaactcaaaaagagcaactatgtattaaaaaacataatattttaactttttagaagttgattgcacgattttgatatgtatat 28490610  T
Q  144 ttctataattagttcttcaacatgtgcccttaaggacaaaaattagcatttgccata 200  Q
    ||||||||| | ||| | |||||||| | |||||  || ||||||||||||| ||||    
T  28490611 ttctataatgaattccttaacatgtgtcattaagagcacaaattagcatttgtcata 28490667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 133
Target Start/End: Complemental strand, 4658813 - 4658732
Alignment:
Q  52 catgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaactttt 133  Q
    ||||||||| |||| ||||| ||||||||||||| | |||||| |||||   || ||||||||||||||||||||| |||||    
T  4658813 catgttaagcaacttaaaaagaacaattttacatcggaaaacacaatatgacaatttttaagaagttgaatgcacacctttt 4658732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 5799755 - 5799840
Alignment:
Q  48 ggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaactttt 133  Q
    ||||||||||||  |||  ||||| | || |||| ||||||||||| |||||| | ||| ||||||||||||||||||||||||||    
T  5799755 ggcacatgttaaacaacctaaaaagagcagttttgcattgaaaaacgtaatatgtcaacctttaagaagttgaatgcacaactttt 5799840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 126
Target Start/End: Original strand, 40030666 - 40030762
Alignment:
Q  29 tgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcac 126  Q
    |||||||||| | || |||||||||||||||| || | |||| ||  ||||||| ||||||||| |||||||||| |||||| | |||||||||||||    
T  40030666 tgttaacttgcaccccaagggcacatgttaagcaatttaaaagtagaaattttaaattgaaaaa-ataatattttgacttttcaaaagttgaatgcac 40030762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 118
Target Start/End: Complemental strand, 25366899 - 25366810
Alignment:
Q  29 tgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagtt 118  Q
    ||||||||||| ||||||  |||||||||||| |||| ||||| |  || |||| ||||  |||||||||| |||||||||||| |||||    
T  25366899 tgttaacttgtgtcctaaaagcacatgttaagaaacttaaaaagagtaaatttatattgggaaacataatagtttaacttttaaaaagtt 25366810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 120
Target Start/End: Complemental strand, 14758818 - 14758782
Alignment:
Q  84 attgaaaaacataatattttaacttttaagaagttga 120  Q
    |||| ||||||||||||||||||||||||||||||||    
T  14758818 attggaaaacataatattttaacttttaagaagttga 14758782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 133
Target Start/End: Complemental strand, 3896022 - 3895967
Alignment:
Q  78 ttttacattgaaaaacataatattttaacttttaagaagttgaatgcacaactttt 133  Q
    ||||||||||||||| |||||||||||| |||| ||||||||| | || |||||||    
T  3896022 ttttacattgaaaaatataatattttaagtttttagaagttgattacataactttt 3895967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 16583317 - 16583215
Alignment:
Q  31 ttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaact 130  Q
    ||||||||| || ||||||||||||||||||||  ||||   | ||| |||| |||  ||||||| ||| ||||||| |||||||||||| | ||| |||    
T  16583317 ttaacttgtgtcataagggcacatgttaaggaatccaaattgagcaactttaaattagaaaacatgataatttaactattaagaagttgactacacgact 16583218  T
Q  131 ttt 133  Q
    |||    
T  16583217 ttt 16583215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 133
Target Start/End: Original strand, 29033009 - 29033039
Alignment:
Q  103 taacttttaagaagttgaatgcacaactttt 133  Q
    |||||||||||||||||||||||||||||||    
T  29033009 taacttttaagaagttgaatgcacaactttt 29033039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 142
Target Start/End: Original strand, 37316619 - 37316683
Alignment:
Q  76 aattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaactttttgatacata 142  Q
    ||||||||||| |||||||||| | |||||||||||||||||| ||| ||| | |||||||||||||    
T  37316619 aattttacattaaaaaacataaca-tttaacttttaagaagttaaatacacga-tttttgatacata 37316683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 11248590 - 11248626
Alignment:
Q  24 ggtaatgttaacttgtatcctaagggcacatgttaag 60  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  11248590 ggtaatgttaacttgtattctaagagcacatgttaag 11248626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 11420917 - 11420873
Alignment:
Q  89 aaaacataatattttaacttttaagaagttgaatgcacaactttt 133  Q
    ||||||||| ||||| ||| |||||||||||||| ||||||||||    
T  11420917 aaaacataacatttttactattaagaagttgaatacacaactttt 11420873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 53 - 170
Target Start/End: Complemental strand, 10523795 - 10523677
Alignment:
Q  53 atgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaactttttgatac--atacttctata 150  Q
    ||||||||||| ||||||| |||||||||| ||||  |||||||||| ||||||||||||||| |||||||||| || |||||||||  ||| |||||||    
T  10523795 atgttaaggaattcaaaaagaacaattttatattggtaaacataatagtttaacttttaagaaattgaatgcacgac-ttttgatacgtatatttctata 10523697  T
Q  151 attagttcttcaacatgtgc 170  Q
    || ||||| | |||||||||    
T  10523696 atgagttccttaacatgtgc 10523677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 32 - 126
Target Start/End: Original strand, 40044801 - 40044895
Alignment:
Q  32 taacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcac 126  Q
    |||||||| || ||||||||||||||||||||| |||||| | |||||||   ||| ||||||||  ||||||| ||||||||||||||||||||    
T  40044801 taacttgtgtcgtaagggcacatgttaaggaacccaaaaagagcaattttgtgttggaaaacatacaattttaatttttaagaagttgaatgcac 40044895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 10197158 - 10197053
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaa-------aacataatattttaacttttaagaagttga 120  Q
    |||||||||||| |||||| |||| |||||||| |||  ||||| ||||| ||||||||| ||       ||||||||||||||||||||||||||||||    
T  10197158 atgttaacttgtgtcctaaaggcatatgttaagtaacctaaaaagaacaactttacattggaatttggtaaacataatattttaacttttaagaagttga 10197059  T
Q  121 atgcac 126  Q
    ||||||    
T  10197058 atgcac 10197053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 554284 - 554382
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcac 126  Q
    |||||||||||| ||||||| |||||||||||| ||  |||||  ||||||||| ||||| |||| || ||| |||||||||||| ||||||| |||||    
T  554284 atgttaacttgtgtcctaagagcacatgttaagaaatccaaaatgaacaattttgcattggaaaatatgataatttaacttttaaaaagttgactgcac 554382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 134
Target Start/End: Complemental strand, 43340389 - 43340338
Alignment:
Q  83 cattgaaaaacataatattttaacttttaagaagttgaatgcacaacttttt 134  Q
    ||||| |||||||||||| |||||||||||||||||||||| ||||||||||    
T  43340389 cattggaaaacataatatattaacttttaagaagttgaatgtacaacttttt 43340338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 4164399 - 4164461
Alignment:
Q  66 caaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaa 128  Q
    |||||| | ||| ||||||||| |||| ||||||| |||||||||||||||||||||||||||    
T  4164399 caaaaagagcaactttacattggaaaatataatatgttaacttttaagaagttgaatgcacaa 4164461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 134
Target Start/End: Complemental strand, 26105174 - 26105068
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcaca 127  Q
    ||||||| ||||  ||||||||||||||||||| ||| |||||  |  || ||| ||| | |||||||||||| | |||||||||||| ||||||||||     
T  26105174 atgttaatttgttccctaagggcacatgttaagcaacccaaaatgagaaactttgcatcggaaaacataatatatcaacttttaagaatttgaatgcacg 26105075  T
Q  128 acttttt 134  Q
    |||||||    
T  26105074 acttttt 26105068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 112
Target Start/End: Original strand, 12212181 - 12212265
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaa 112  Q
    |||||||||| | |||||| | ||| |||||| ||||||||||| |  || ||| ||||||||||||||||||||||| ||||||    
T  12212181 atgttaacttatgtcctaatgacacgtgttaaagaactcaaaaagagtaactttgcattgaaaaacataatattttaatttttaa 12212265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 24519417 - 24519499
Alignment:
Q  48 ggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaactt 131  Q
    ||||||||||||| || | ||||| ||||| ||| |||||||||| |||| || | ||||||||||||||||||||||| ||||    
T  24519417 ggcacatgttaagtaa-taaaaaacaacaactttgcattgaaaaatataacatgtcaacttttaagaagttgaatgcacgactt 24519499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 133
Target Start/End: Original strand, 16627302 - 16627360
Alignment:
Q  75 caattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaactttt 133  Q
    ||||||| ||||  |||||||| ||||||||||||||| ||||||||||||| ||||||    
T  16627302 caattttgcattagaaaacatagtattttaacttttaaaaagttgaatgcacgactttt 16627360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 7738342 - 7738390
Alignment:
Q  75 caattttacattgaaaaacataatattttaacttttaagaagttgaatg 123  Q
    ||||||||||||| ||||||| ||| |||||||||||| ||||||||||    
T  7738342 caattttacattggaaaacatgatagtttaacttttaataagttgaatg 7738390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 181
Target Start/End: Original strand, 41144637 - 41144731
Alignment:
Q  88 aaaaacataatattttaacttttaagaagttgaatgcacaactttttgata--catacttctataattagttcttcaacatgtgcccttaaggaca 181  Q
    ||||| |||| | |||||||||||| ||||||||||||| || ||||||||   ||| ||||||||| ||||| | ||||||||||||| ||||||    
T  41144637 aaaaatataacagtttaacttttaaaaagttgaatgcacgac-ttttgatatgtatatttctataatgagttccttaacatgtgcccttgaggaca 41144731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 134
Target Start/End: Complemental strand, 41064014 - 41063908
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcaca 127  Q
    |||||||||||| || |||  |||||||||||| |||  ||||| | ||||||| |||||||||| || |||| || | |||| | ||||| |||||||     
T  41064014 atgttaacttgtgtcataaaagcacatgttaagcaacctaaaaaaagcaattttgcattgaaaaatattatatatttattttttaaaagtttaatgcacg 41063915  T
Q  128 acttttt 134  Q
    |||||||    
T  41063914 acttttt 41063908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 10431583 - 10431542
Alignment:
Q  30 gttaacttgtatcctaagggcacatgttaaggaactcaaaaa 71  Q
    ||||||||||  |||||||||||||||||| |||||||||||    
T  10431583 gttaacttgtgccctaagggcacatgttaaagaactcaaaaa 10431542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 112
Target Start/End: Complemental strand, 29557637 - 29557553
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaa 112  Q
    |||||| |||||  |||||| |||||||||||||||| |||||  | ||| |||  |||| ||||||| ||| ||||||||||||    
T  29557637 atgttatcttgtgccctaagagcacatgttaaggaacccaaaatgagcaactttgtattggaaaacatgataatttaacttttaa 29557553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 60
Target Start/End: Complemental strand, 43340591 - 43340559
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaag 60  Q
    |||||||||||| ||||||||||||||||||||    
T  43340591 atgttaacttgtgtcctaagggcacatgttaag 43340559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 133
Target Start/End: Original strand, 13055 - 13145
Alignment:
Q  43 ctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaactttt 133  Q
    ||||||| |||||||||||||| |||||| | ||||||| ||||  |||||||||| | |||| ||||||||||||||||| || ||||||    
T  13055 ctaagggtacatgttaaggaacgcaaaaagagcaattttgcatttgaaaacataatttgttaatttttaagaagttgaatgtactactttt 13145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 142
Target Start/End: Original strand, 553 - 618
Alignment:
Q  76 aattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaactttttgatacata 142  Q
    |||||||||||| ||||||||| |||||||  ||||||||||||||||||| || ||||||||||||    
T  553 aattttacattggaaaacataacattttaatgtttaagaagttgaatgcacgac-ttttgatacata 618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 168
Target Start/End: Complemental strand, 12517 - 12431
Alignment:
Q  83 cattgaaaaacataatattttaacttttaagaagttgaatgcacaactttttgatac--atacttctataattagttcttcaacatgt 168  Q
    ||||| ||||||| | ||||||  ||||||||||||||||||||||| |||||||||  ||| || |||||||||||||| |||||||    
T  12517 cattggaaaacatgacattttagtttttaagaagttgaatgcacaac-ttttgatacgtatatttttataattagttctttaacatgt 12431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 142
Target Start/End: Original strand, 2959 - 3071
Alignment:
Q  32 taacttgtatcctaagggcacatgttaa---ggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcacaa 128  Q
    |||||||| | || ||||||||||||||   |||||  ||||| |  |||||| ||||  ||||||||| |||||||||||||||||||||||||||  |    
T  2959 taacttgtgttcttagggcacatgttaataaggaacctaaaaagattaattttgcatttgaaaacataacattttaacttttaagaagttgaatgcatga 3058  T
Q  129 ctttttgatacata 142  Q
    | ||||||||||||    
T  3059 c-ttttgatacata 3071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0542 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0542
Description:

Target: scaffold0542; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 4679 - 4582
Alignment:
Q  28 atgttaacttgtatcctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataatattttaacttttaagaagttgaatgcac 126  Q
    |||||||||||| || ||| ||||||| ||||| |||  ||||| | |||||| ||||||||||| |||||||   || ||||||||||||||||||||    
T  4679 atgttaacttgtgtcataaaggcacatattaagcaacctaaaaagagcaatttcacattgaaaaa-ataatatgacaatttttaagaagttgaatgcac 4582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 8527 - 8471
Alignment:
Q  42 cctaagggcacatgttaaggaactcaaaaataacaattttacattgaaaaacataat 98  Q
    |||||||| |||||||||||||| |||||| | ||||||| ||||  ||||||||||    
T  8527 cctaagggtacatgttaaggaacgcaaaaagagcaattttgcatttgaaaacataat 8471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University