View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_157 (Length: 244)
Name: NF20665_low_157
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_157 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 49 - 244
Target Start/End: Original strand, 3806981 - 3807176
Alignment:
| Q |
49 |
aataaaaacacgacttgaataaatgctatatttgtttattaataaatatgatttaaatttgcttttgttccaaaatcatttgattttggtgtagaccaat |
148 |
Q |
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| T |
3806981 |
aataaaaacacgacttggataaatgctatatttgtttattaataaatatgatttaaatttgcttttgttccaaaatcatttgattttggtttagaccaat |
3807080 |
T |
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| Q |
149 |
atagataacacaagttctttggagacaaagataaggagtgccaccaaagaagctattgaagaaatagaaagctgtggaacagtgtgtggccgcacc |
244 |
Q |
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| T |
3807081 |
atagataacacaagttctttggagactaagataaggagtgccaccaaagaagctattgaagaaatagaaagctgtggaacagtgtgtggctgcacc |
3807176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 126 - 238
Target Start/End: Original strand, 3775101 - 3775213
Alignment:
| Q |
126 |
atttgattttggtgtagaccaatatagataacacaagttctttggagacaaagataaggagtgccaccaaagaagctattgaagaaatagaaagctgtgg |
225 |
Q |
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| T |
3775101 |
atttaattttggtgcagaccaatatatacagaacaagttctttggagacaaagataaggagtgccactaaagaagctattcaagaaataaaaagctgtga |
3775200 |
T |
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| Q |
226 |
aacagtgtgtggc |
238 |
Q |
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| T |
3775201 |
agcagtgtgtggc |
3775213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 3806915 - 3806967
Alignment:
| Q |
4 |
tgtgtgtgttatatttttaaattaatttcaatacttatcagcaaaaataaaaa |
56 |
Q |
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| T |
3806915 |
tgtgtgtgtgttatttttaaattaatttcaatacttatcagcaaaaataaaaa |
3806967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 3775024 - 3775072
Alignment:
| Q |
89 |
aataaatatgatttaaatttgcttttgttccaaaatcatttgattttgg |
137 |
Q |
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| T |
3775024 |
aataaatatgatttaaattttcttttgttccaaaagcattagattttgg |
3775072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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