View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_158 (Length: 244)
Name: NF20665_low_158
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_158 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 30225071 - 30225294
Alignment:
| Q |
13 |
atcaacttcataattgtttaatattttatccgtgctacaaatattatctgttgtacgcaccattctgaggaatagcatatgaaatctgtttatatatgaa |
112 |
Q |
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| T |
30225071 |
atcaacttcataattgtttaatattttatccgtgctacaaatattatctgttgtacgcaccattctgaggaatagcatatgaaatctgtttatatatgaa |
30225170 |
T |
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| Q |
113 |
tgtgaaattctgctgactgcacgaaatctgaatctgctttattgggacaaatctttgatgccaagnnnnnnngtgttcttgaatggacttcctctgtttg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
30225171 |
tgtgaaattctgctgactgcacgaaatctgaatctgttttattgggacaaatccttgatgccaagaaataaagtgttcttgaatggacttcctctgtttg |
30225270 |
T |
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| Q |
213 |
gtctagtcagtgtgttgttctttt |
236 |
Q |
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|||||||||||||||||||||||| |
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| T |
30225271 |
gtctagtcagtgtgttgttctttt |
30225294 |
T |
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