View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_159 (Length: 242)
Name: NF20665_low_159
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_159 |
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| [»] scaffold0194 (1 HSPs) |
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Alignment Details
Target: scaffold0194 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: scaffold0194
Description:
Target: scaffold0194; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 26313 - 26454
Alignment:
| Q |
18 |
catgcctggttcatacgtgcaaagggtaattttaatttatttattttcttcaagaaaaattgtatgttctagctcactatattgcaccaaagttttaaac |
117 |
Q |
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| T |
26313 |
catgcctggttcatacgtgcaaagggtaattttaatttatttattttcttcaagaaaaattgtatgttctagctcactatattgcaccaaagttttaaac |
26412 |
T |
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| Q |
118 |
aatggttagagttagacacaaactaggaaagaagttgtaata |
159 |
Q |
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| T |
26413 |
aatggttagagttagacacaaactaggaaagaagttgtaata |
26454 |
T |
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